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The map label for this gene is rpiB [H]

Identifier: 29345756

GI number: 29345756

Start: 415102

End: 415536

Strand: Reverse

Name: rpiB [H]

Synonym: BT_0346

Alternate gene names: 29345756

Gene position: 415536-415102 (Counterclockwise)

Preceding gene: 29345757

Following gene: 29345753

Centisome position: 6.64

GC content: 48.28

Gene sequence:

>435_bases
ATGAAAACAATTGGATTAGCATGCGACCACGCCGGTTTTGAACTAAAAGAATATGTTCGCGGCTGGCTGGAAGTAAAAGG
CTGGGCTTACAAAGATTTCGGAACCAACTCTGCCGCAAGCGTAGATTATCCGGACTATGCCCATCCGCTGGCCCTAGCAG
TAGAATCGGGTGAATGTTATCCCGGTATTGCGATCTGCGGCAGCGGAAACGGAATCAACATGACTCTGAACAAGCATCAG
GGAATACGTGCTGCTCTTTGCTGGAATGCAGAGATCGCACATCTGGCCCGTCAACATAATGACGCTAATATTCTCGTGAT
GCCGGGACGCTTCATCAGCACTGAGGAGGCGGACATGATATTGACAGAGTTCTTCTCAACACAGTTTGAGGGGGGACGCC
ATCAAAATCGTATTGATAAGATTCCGGTAAAATAA

Upstream 100 bases:

>100_bases
GATTGGAATCTTTCGGTTTCTCTGCTCCTTACACAGTATTGGATGAAAAACTTGGATTTACTGCCGAGAACGTATATAAT
CAGGTAAAAGCAATGATTTA

Downstream 100 bases:

>100_bases
TGCCTGAAAATCTATAAAAATAAGGTGGAATATTTAATAAATATCCCACCTTATTTTTAAAACATGAGGCTCAAGGAATA
TATAACCATAGTCTTTGTCT

Product: ribose 5-phosphate isomerase B

Products: NA

Alternate protein names: Phosphoriboisomerase B [H]

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MKTIGLACDHAGFELKEYVRGWLEVKGWAYKDFGTNSAASVDYPDYAHPLALAVESGECYPGIAICGSGNGINMTLNKHQ
GIRAALCWNAEIAHLARQHNDANILVMPGRFISTEEADMILTEFFSTQFEGGRHQNRIDKIPVK

Sequences:

>Translated_144_residues
MKTIGLACDHAGFELKEYVRGWLEVKGWAYKDFGTNSAASVDYPDYAHPLALAVESGECYPGIAICGSGNGINMTLNKHQ
GIRAALCWNAEIAHLARQHNDANILVMPGRFISTEEADMILTEFFSTQFEGGRHQNRIDKIPVK
>Mature_144_residues
MKTIGLACDHAGFELKEYVRGWLEVKGWAYKDFGTNSAASVDYPDYAHPLALAVESGECYPGIAICGSGNGINMTLNKHQ
GIRAALCWNAEIAHLARQHNDANILVMPGRFISTEEADMILTEFFSTQFEGGRHQNRIDKIPVK

Specific function: In addition to its activity on D-ribose 5-phosphate it probably also has activity on D-allose 6-phosphate [H]

COG id: COG0698

COG function: function code G; Ribose 5-phosphate isomerase RpiB

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lacAB/rpiB family [H]

Homologues:

Organism=Escherichia coli, GI1790528, Length=142, Percent_Identity=45.7746478873239, Blast_Score=127, Evalue=3e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003500
- InterPro:   IPR004785 [H]

Pfam domain/function: PF02502 LacAB_rpiB [H]

EC number: =5.3.1.6 [H]

Molecular weight: Translated: 15914; Mature: 15914

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTIGLACDHAGFELKEYVRGWLEVKGWAYKDFGTNSAASVDYPDYAHPLALAVESGECY
CCCCCCEECCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCC
PGIAICGSGNGINMTLNKHQGIRAALCWNAEIAHLARQHNDANILVMPGRFISTEEADMI
CCEEEEECCCCEEEEEECCCCEEEEEEECHHHHHHHHHCCCCEEEEECCCEECCCCHHHH
LTEFFSTQFEGGRHQNRIDKIPVK
HHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKTIGLACDHAGFELKEYVRGWLEVKGWAYKDFGTNSAASVDYPDYAHPLALAVESGECY
CCCCCCEECCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCC
PGIAICGSGNGINMTLNKHQGIRAALCWNAEIAHLARQHNDANILVMPGRFISTEEADMI
CCEEEEECCCCEEEEEECCCCEEEEEEECHHHHHHHHHCCCCEEEEECCCEECCCCHHHH
LTEFFSTQFEGGRHQNRIDKIPVK
HHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8576032; 7610040; 9278503; 1840580; 7984428; 9401019 [H]