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The map label for this gene is xerD [C]

Identifier: 29345643

GI number: 29345643

Start: 253724

End: 254845

Strand: Reverse

Name: xerD [C]

Synonym: BT_0233

Alternate gene names: 29345643

Gene position: 254845-253724 (Counterclockwise)

Preceding gene: 29345644

Following gene: 29345642

Centisome position: 4.07

GC content: 48.4

Gene sequence:

>1122_bases
ATGAGCAACATTTGCAAGACCGTATCATTGCGTACACGCAAAATCAAGGACGGACACATGCTGTCCTATTATCTTGACTA
TTATCCAGGCTATCGTGACGAGAGCACGATGAAAGTCATTCGCCATGAGTCGCTTGGCATCTACATCTATGCCAAGCCGA
AGAACCAGATGGAACAGAAGTACAACCTCAACCTTATGGCAAGAGCCGAGGCGATACGCTGCCGTCGCTTCGAAGCTATC
GTCAACGAGCGTTACGACTTCTTCGACAAGGAGAAAATGAAGGGAGATTTCCTTGCCTACTTCAAGAAACTGGCAGACAA
GAAGAACTCCAAGTGGCAGCACGTCTATATGCACTTTCGTACATTCACGCAAGGCAAGTGTACCTTTGGGGAGATAAACG
TGGACTTGTGCAACAGATTTCGTGAGTATCTGCTGACAGCACCACAGGGACTGCATAAGAACAGAAAGCTACATATCAAC
TCAGCAGCCAACTACTGGTCAACTTTCCGTGCTTCAATCCACACTGCCTATCGTGACCGCAAGATAAAGGAGAACCCGAA
CGGTTTCTTGGAACGTATCGAGACAATCCCGACTGACAAGGAGCATCTTTCACAAGACGAGGTTATCCGCTTGGCATCCA
CACCATGCTCTGCTCCTGCCTTGAAGCGAGCCTTCCTTTTCTCTTGCCTAACGGCATTGCGAAAGAGCGACATCAAGAAA
CTCACTTGGGAGGAGATACAGCCATACGGCAGCGATGGTGTGATGTATGTCACCACACGAATGCAGAAGACAAAGGACAT
CGTGCATAACCCTATCAGTGAGGAAGCCTTGGAACTGATAGGCTATTCACCAGATAAACGAGGCAAGGTGTTCCCCGATT
TCAAAGACTCCATGACACAGGCACCGCTGAAAAATTGGCTGAAAGATGCAGGGATTACCAAGCATATCTCCTATCATTGT
TCACGCCACAGCTTTGCCTGTCTCCAGCTGGACGCAGGAACAAGTATTGCGGTTGTGCAGCGTTATCTCGGTCACAAGAA
TGTGGCAACAACAGAAGTGTATGCCAAGATTTCCGATGCACAGAAGCGTGCTTCGGTTGGCTGCATCACCTTGAAGAAGT
AA

Upstream 100 bases:

>100_bases
GTTACTATGAATAATTGGAGTCACGGATGCATCATTTTATTCCTTTGCAGCCGTGAAGAGACACTTCACTACGAATAATC
ATAAATAATACATATCAGTT

Downstream 100 bases:

>100_bases
CCATTTGACAATAATACACAGAAAAGGACTGTTGGAATGATAGTGTTCCAATAGTCCTTTTCTCATTTTGTTGGTTCTAT
TTGCTGTCGTGGATAGAACC

Product: integrase

Products: NA

Alternate protein names: Tyrosine Type Site-Specific Recombinase; Integrase Family Protein; Transposase; Phage Integrase Family Protein; Site-Specific Recombinase; Bacteriophage Integrase; Site-Specific Recombinase Phage Integrase Family; Mobilizable Transposon Int Protein; Mobilizable Transposon; Tyrosine Recombinase XerD; Integrase/Transposase; Mobilizable Transposon Protein Int Protein; Phage Integrase Family Site Specific Recombinase

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MSNICKTVSLRTRKIKDGHMLSYYLDYYPGYRDESTMKVIRHESLGIYIYAKPKNQMEQKYNLNLMARAEAIRCRRFEAI
VNERYDFFDKEKMKGDFLAYFKKLADKKNSKWQHVYMHFRTFTQGKCTFGEINVDLCNRFREYLLTAPQGLHKNRKLHIN
SAANYWSTFRASIHTAYRDRKIKENPNGFLERIETIPTDKEHLSQDEVIRLASTPCSAPALKRAFLFSCLTALRKSDIKK
LTWEEIQPYGSDGVMYVTTRMQKTKDIVHNPISEEALELIGYSPDKRGKVFPDFKDSMTQAPLKNWLKDAGITKHISYHC
SRHSFACLQLDAGTSIAVVQRYLGHKNVATTEVYAKISDAQKRASVGCITLKK

Sequences:

>Translated_373_residues
MSNICKTVSLRTRKIKDGHMLSYYLDYYPGYRDESTMKVIRHESLGIYIYAKPKNQMEQKYNLNLMARAEAIRCRRFEAI
VNERYDFFDKEKMKGDFLAYFKKLADKKNSKWQHVYMHFRTFTQGKCTFGEINVDLCNRFREYLLTAPQGLHKNRKLHIN
SAANYWSTFRASIHTAYRDRKIKENPNGFLERIETIPTDKEHLSQDEVIRLASTPCSAPALKRAFLFSCLTALRKSDIKK
LTWEEIQPYGSDGVMYVTTRMQKTKDIVHNPISEEALELIGYSPDKRGKVFPDFKDSMTQAPLKNWLKDAGITKHISYHC
SRHSFACLQLDAGTSIAVVQRYLGHKNVATTEVYAKISDAQKRASVGCITLKK
>Mature_372_residues
SNICKTVSLRTRKIKDGHMLSYYLDYYPGYRDESTMKVIRHESLGIYIYAKPKNQMEQKYNLNLMARAEAIRCRRFEAIV
NERYDFFDKEKMKGDFLAYFKKLADKKNSKWQHVYMHFRTFTQGKCTFGEINVDLCNRFREYLLTAPQGLHKNRKLHINS
AANYWSTFRASIHTAYRDRKIKENPNGFLERIETIPTDKEHLSQDEVIRLASTPCSAPALKRAFLFSCLTALRKSDIKKL
TWEEIQPYGSDGVMYVTTRMQKTKDIVHNPISEEALELIGYSPDKRGKVFPDFKDSMTQAPLKNWLKDAGITKHISYHCS
RHSFACLQLDAGTSIAVVQRYLGHKNVATTEVYAKISDAQKRASVGCITLKK

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43324; Mature: 43193

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNICKTVSLRTRKIKDGHMLSYYLDYYPGYRDESTMKVIRHESLGIYIYAKPKNQMEQK
CCCHHHHHHHHHEECCCCCEEEEHHHHCCCCCCCHHHHHHHCCCCEEEEEECCHHHHHHH
YNLNLMARAEAIRCRRFEAIVNERYDFFDKEKMKGDFLAYFKKLADKKNSKWQHVYMHFR
HCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCEEEEEEEH
TFTQGKCTFGEINVDLCNRFREYLLTAPQGLHKNRKLHINSAANYWSTFRASIHTAYRDR
HHCCCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCC
KIKENPNGFLERIETIPTDKEHLSQDEVIRLASTPCSAPALKRAFLFSCLTALRKSDIKK
CCCCCCCHHHHHHHHCCCCHHHCCHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LTWEEIQPYGSDGVMYVTTRMQKTKDIVHNPISEEALELIGYSPDKRGKVFPDFKDSMTQ
CCHHHCCCCCCCCEEEEEEHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHH
APLKNWLKDAGITKHISYHCSRHSFACLQLDAGTSIAVVQRYLGHKNVATTEVYAKISDA
HHHHHHHHHCCCHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHH
QKRASVGCITLKK
HHHCCCCEEEECC
>Mature Secondary Structure 
SNICKTVSLRTRKIKDGHMLSYYLDYYPGYRDESTMKVIRHESLGIYIYAKPKNQMEQK
CCHHHHHHHHHEECCCCCEEEEHHHHCCCCCCCHHHHHHHCCCCEEEEEECCHHHHHHH
YNLNLMARAEAIRCRRFEAIVNERYDFFDKEKMKGDFLAYFKKLADKKNSKWQHVYMHFR
HCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCEEEEEEEH
TFTQGKCTFGEINVDLCNRFREYLLTAPQGLHKNRKLHINSAANYWSTFRASIHTAYRDR
HHCCCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCC
KIKENPNGFLERIETIPTDKEHLSQDEVIRLASTPCSAPALKRAFLFSCLTALRKSDIKK
CCCCCCCHHHHHHHHCCCCHHHCCHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LTWEEIQPYGSDGVMYVTTRMQKTKDIVHNPISEEALELIGYSPDKRGKVFPDFKDSMTQ
CCHHHCCCCCCCCEEEEEEHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHH
APLKNWLKDAGITKHISYHCSRHSFACLQLDAGTSIAVVQRYLGHKNVATTEVYAKISDA
HHHHHHHHHCCCHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHH
QKRASVGCITLKK
HHHCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA