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The map label for this gene is deoB [H]

Identifier: 29144842

GI number: 29144842

Start: 4763196

End: 4764419

Strand: Direct

Name: deoB [H]

Synonym: t4612

Alternate gene names: 29144842

Gene position: 4763196-4764419 (Clockwise)

Preceding gene: 29144841

Following gene: 29144843

Centisome position: 99.4

GC content: 57.6

Gene sequence:

>1224_bases
ATGAAACGTGCATTTATTATGGTGCTGGACTCATTCGGCATCGGCGCTACTGAAGACGCGGATCGTTTTGGCGACGTAGG
TTCCGACACTCTGGGCCACATCGCAGAAGCTTGCGCCAAAGGCGAAGCTGACAATGGCCGTAAGGGCCCGTTGAATCTGC
CTAACCTGACTCGTCTGGGGCTGGTGAAAGCGCATGAAGGCTCTACCGGTAAAATTGCCGCCGGCATGGACGGCAACGCG
GACGTTATTGGCGCATACGCATGGGCGCACGAACTGTCCTCCGGCAAAGATACGCCGTCCGGCCACTGGGAAATCGCCGG
CGTGCCGGTGCTGTTCGACTGGGGCTATTTCAGCGACCACGAAAACAGCTTCCCGCAGGAACTGCTGGATAAGCTGGTAA
AACGCGCCAACCTGCCGGGCTATCTCGGTAACTGCCACTCTTCCGGTACGGTCATTCTGGACCAGCTCGGCGAAGAGCAC
ATGAAAACCGGCAAGCCGATTTTTTACACCTCCGCTGACTCCGTGTTCCAGATTGCCTGCCACGAAGAGACCTTTGGCCT
GGATAAACTCTACGAGCTGTGCGAAATCGCCCGTGAAGAGCTGACCGAAGGCGGCTACAACATTGGCCGCGTGATCGCGC
GTCCGTTTATCGGCGACAAGGCCGGTAACTTCCAGCGTACCGGCAACCGTCACGACCTGGCCGTAGAACCGCCAGCGCCG
ACCGTGCTGCAGAAACTGGTCGATGAAAAACAGGGCCACGTGGTGTCCGTCGGTAAGATTGCCGACATCTACGCCAACTG
CGGCATCACTAAGAAAGTGAAAGCGACCGGTCTGGACGCGCTGTTCGACGCGACCCTCAAAGAGATGAAAGAAGCGGGCG
ATAAAACCATCGTTTTCACTAACTTCGTTGACTTCGACTCTTCCTGGGGCCACCGTCGCGACATCGCGGGCTACGCCGCA
GGTCTGGAGCTGTTTGACCGCCGTCTGCCGGAGCTGATGGAGCTGGTGGGTGAAGATGACATTCTGATCCTGACCGCTGA
CCACGGCTGTGACCCGAGCTGGACCGGTACTGACCATACCCGTGAGCACATTCCGGTGCTGATCTACGGTCCGAAAGTCA
AACCGGGCTCTTTAGGTCACCGTGAAACCTTTGCGGATATCGGCCAGACGCTGGCGACCTACTTTGGTACATCGCCGATG
GACTACGGTAAAAACATGCTGTGA

Upstream 100 bases:

>100_bases
TAAAGCGCCAGCAAGCACACCTTCGGTCTATCGTCGAATTACTGAATAGTTGTATACTGATCTGATCAATTATTTTTGAA
GCACTAAGTACGGAGAAGAT

Downstream 100 bases:

>100_bases
TACCCGTTGTCTTTCGCGCTGTAGATGCGTTGACTTCATTCGCTCACCCCGGTCACATAGTTAATCTATGCTCCCGGGGA
TTCACGAATTCGTCGCCTTC

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MKRAFIMVLDSFGIGATEDADRFGDVGSDTLGHIAEACAKGEADNGRKGPLNLPNLTRLGLVKAHEGSTGKIAAGMDGNA
DVIGAYAWAHELSSGKDTPSGHWEIAGVPVLFDWGYFSDHENSFPQELLDKLVKRANLPGYLGNCHSSGTVILDQLGEEH
MKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTEGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAP
TVLQKLVDEKQGHVVSVGKIADIYANCGITKKVKATGLDALFDATLKEMKEAGDKTIVFTNFVDFDSSWGHRRDIAGYAA
GLELFDRRLPELMELVGEDDILILTADHGCDPSWTGTDHTREHIPVLIYGPKVKPGSLGHRETFADIGQTLATYFGTSPM
DYGKNML

Sequences:

>Translated_407_residues
MKRAFIMVLDSFGIGATEDADRFGDVGSDTLGHIAEACAKGEADNGRKGPLNLPNLTRLGLVKAHEGSTGKIAAGMDGNA
DVIGAYAWAHELSSGKDTPSGHWEIAGVPVLFDWGYFSDHENSFPQELLDKLVKRANLPGYLGNCHSSGTVILDQLGEEH
MKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTEGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAP
TVLQKLVDEKQGHVVSVGKIADIYANCGITKKVKATGLDALFDATLKEMKEAGDKTIVFTNFVDFDSSWGHRRDIAGYAA
GLELFDRRLPELMELVGEDDILILTADHGCDPSWTGTDHTREHIPVLIYGPKVKPGSLGHRETFADIGQTLATYFGTSPM
DYGKNML
>Mature_407_residues
MKRAFIMVLDSFGIGATEDADRFGDVGSDTLGHIAEACAKGEADNGRKGPLNLPNLTRLGLVKAHEGSTGKIAAGMDGNA
DVIGAYAWAHELSSGKDTPSGHWEIAGVPVLFDWGYFSDHENSFPQELLDKLVKRANLPGYLGNCHSSGTVILDQLGEEH
MKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTEGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAP
TVLQKLVDEKQGHVVSVGKIADIYANCGITKKVKATGLDALFDATLKEMKEAGDKTIVFTNFVDFDSSWGHRRDIAGYAA
GLELFDRRLPELMELVGEDDILILTADHGCDPSWTGTDHTREHIPVLIYGPKVKPGSLGHRETFADIGQTLATYFGTSPM
DYGKNML

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=407, Percent_Identity=93.6117936117936, Blast_Score=794, Evalue=0.0,
Organism=Escherichia coli, GI1789781, Length=441, Percent_Identity=28.5714285714286, Blast_Score=113, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 44244; Mature: 44244

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRAFIMVLDSFGIGATEDADRFGDVGSDTLGHIAEACAKGEADNGRKGPLNLPNLTRLG
CCCEEEEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHC
LVKAHEGSTGKIAAGMDGNADVIGAYAWAHELSSGKDTPSGHWEIAGVPVLFDWGYFSDH
EEEECCCCCCEEEECCCCCCCEEEHHHHHHHHCCCCCCCCCCEEEECCEEEEECCCCCCC
ENSFPQELLDKLVKRANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIAC
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHCHHHHHCCCCEEEECCCCEEEEEE
HEETFGLDKLYELCEIAREELTEGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAP
CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCH
TVLQKLVDEKQGHVVSVGKIADIYANCGITKKVKATGLDALFDATLKEMKEAGDKTIVFT
HHHHHHHHHCCCCEEEECHHHHHHHCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCEEEEE
NFVDFDSSWGHRRDIAGYAAGLELFDRRLPELMELVGEDDILILTADHGCDPSWTGTDHT
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
REHIPVLIYGPKVKPGSLGHRETFADIGQTLATYFGTSPMDYGKNML
HHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCCCCC
>Mature Secondary Structure
MKRAFIMVLDSFGIGATEDADRFGDVGSDTLGHIAEACAKGEADNGRKGPLNLPNLTRLG
CCCEEEEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHC
LVKAHEGSTGKIAAGMDGNADVIGAYAWAHELSSGKDTPSGHWEIAGVPVLFDWGYFSDH
EEEECCCCCCEEEECCCCCCCEEEHHHHHHHHCCCCCCCCCCEEEECCEEEEECCCCCCC
ENSFPQELLDKLVKRANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIAC
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHCHHHHHCCCCEEEECCCCEEEEEE
HEETFGLDKLYELCEIAREELTEGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAP
CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCH
TVLQKLVDEKQGHVVSVGKIADIYANCGITKKVKATGLDALFDATLKEMKEAGDKTIVFT
HHHHHHHHHCCCCEEEECHHHHHHHCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCEEEEE
NFVDFDSSWGHRRDIAGYAAGLELFDRRLPELMELVGEDDILILTADHGCDPSWTGTDHT
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
REHIPVLIYGPKVKPGSLGHRETFADIGQTLATYFGTSPMDYGKNML
HHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA