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The map label for this gene is yjiW [H]

Identifier: 29144808

GI number: 29144808

Start: 4724363

End: 4724758

Strand: Reverse

Name: yjiW [H]

Synonym: t4573

Alternate gene names: 29144808

Gene position: 4724758-4724363 (Counterclockwise)

Preceding gene: 29144809

Following gene: 29144807

Centisome position: 98.6

GC content: 55.05

Gene sequence:

>396_bases
ATGGCCGTGCGGGAACACGGCCATATCGCTCATCACAATCACTATTCCAGGAGAATAGCCATCATGACTACCGTCCATTC
TATTGCAGATCCGTGCGATCCAGAAGTATCCCCAACAAATAACCGTCACCTTACCGTGAGTTATGCGAGTCGTTATCCGG
ATTATACCCGCATTCCCGCCCTCACCATGAAGGGCCAGTGGCTGGAAGCCGCCGGTTTCGCCACCGGTACCGAGGTGGAT
GTGAGGGTGATGAACGGCTGTATTGTGCTCACGGCACAGCAGCCGCAACCAGAAGAAAGCGAGTTGATGCAGTCGCTGCG
CCAGGCGTGCAAGCTGTCGGCGCGTAAGCAAAAGCAGGTGCAGGCGTTTATCAGCGTGATGGCAGGTTCTAAGTAA

Upstream 100 bases:

>100_bases
AAAATATATCCAGTTTCTTCCTGAACATTCCCATTACAGTCTATTTTCAGCTGGACTTTTCTTTTATTTACTGATGTTAT
ATACAGGTATTTAGCGCGAT

Downstream 100 bases:

>100_bases
ACGCATAAAATAAGCTGGCAAAGAACCCTTGCCAGCTTTAATTATAATTCATATCAATGAGTGAAGGAAAACCATGCGGC
TAAAAGTAAAAGAAAACATT

Product: endoribonuclease SymE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MAVREHGHIAHHNHYSRRIAIMTTVHSIADPCDPEVSPTNNRHLTVSYASRYPDYTRIPALTMKGQWLEAAGFATGTEVD
VRVMNGCIVLTAQQPQPEESELMQSLRQACKLSARKQKQVQAFISVMAGSK

Sequences:

>Translated_131_residues
MAVREHGHIAHHNHYSRRIAIMTTVHSIADPCDPEVSPTNNRHLTVSYASRYPDYTRIPALTMKGQWLEAAGFATGTEVD
VRVMNGCIVLTAQQPQPEESELMQSLRQACKLSARKQKQVQAFISVMAGSK
>Mature_130_residues
AVREHGHIAHHNHYSRRIAIMTTVHSIADPCDPEVSPTNNRHLTVSYASRYPDYTRIPALTMKGQWLEAAGFATGTEVDV
RVMNGCIVLTAQQPQPEESELMQSLRQACKLSARKQKQVQAFISVMAGSK

Specific function: Involved in the degradation and recycling of damaged RNA. It is itself a target for degradation by the ATP-dependent protease La [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the symE family [H]

Homologues:

Organism=Escherichia coli, GI145693217, Length=110, Percent_Identity=79.0909090909091, Blast_Score=187, Evalue=2e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020883
- InterPro:   IPR014944 [H]

Pfam domain/function: PF08845 DUF1813 [H]

EC number: NA

Molecular weight: Translated: 14602; Mature: 14471

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVREHGHIAHHNHYSRRIAIMTTVHSIADPCDPEVSPTNNRHLTVSYASRYPDYTRIPA
CCCCCCCCCCCCCCCHHEEHHEEHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCE
LTMKGQWLEAAGFATGTEVDVRVMNGCIVLTAQQPQPEESELMQSLRQACKLSARKQKQV
EEECCCEEECCCCCCCCEEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
QAFISVMAGSK
HHHHHHHCCCC
>Mature Secondary Structure 
AVREHGHIAHHNHYSRRIAIMTTVHSIADPCDPEVSPTNNRHLTVSYASRYPDYTRIPA
CCCCCCCCCCCCCCHHEEHHEEHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCE
LTMKGQWLEAAGFATGTEVDVRVMNGCIVLTAQQPQPEESELMQSLRQACKLSARKQKQV
EEECCCEEECCCCCCCCEEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
QAFISVMAGSK
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA