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The map label for this gene is rbsD [H]

Identifier: 29143933

GI number: 29143933

Start: 3742616

End: 3743035

Strand: Reverse

Name: rbsD [H]

Synonym: t3638

Alternate gene names: 29143933

Gene position: 3743035-3742616 (Counterclockwise)

Preceding gene: 29143934

Following gene: 29143932

Centisome position: 78.11

GC content: 49.76

Gene sequence:

>420_bases
ATGAAGAAAGGCACCGTACTCAACTCTGAAATCTCGTCGGTCATTTCCCGTCTGGGGCATACTGATACTCTGGTGGTCTG
TGATGCGGGTTTACCCATCCCGAATAGCACTGCGCGTATCGATATGGCACTAACCCAGGGCGTACCTTCTTTTATGCAGG
TGGTGGATGTCGTGACCTGGGAAATGCAGGTTGAGGCGGCGATTCTTGCAACGGAAATCAAACAACAGAATCCGCAGCTC
CACGAAACGTTGCTCACTCACCTTGAGCAACTGCAGCAACACCAGGGAAACACCATAAAAATTAGTTATACGACACACGA
ACAATTCAAAAAATTGACTGCAGACAGTCAGGCAGTGATTCGCAGCGGGGAGTGTTCCCCGTATGCGAACGTCATTATTT
GCGCTGGCGTCACTTTCTGA

Upstream 100 bases:

>100_bases
TTTCGACGGCGATCACAATTCTGTTACGTCATGATGGTTTTATGAACACATCCAGGGTTACACTGCGGCCAGCGAAACGT
TTCGCTAGTGGAGCAGAAAA

Downstream 100 bases:

>100_bases
GGCCGCTATGGACGCATTACTGCAACTCAAAGGGATCGATAAAGCGTTCCCCGGCGTGAAGGCTCTCTCCGGCGCCGCGT
TAAACGTTTATCCTGGCCGC

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMALTQGVPSFMQVVDVVTWEMQVEAAILATEIKQQNPQL
HETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVIICAGVTF

Sequences:

>Translated_139_residues
MKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMALTQGVPSFMQVVDVVTWEMQVEAAILATEIKQQNPQL
HETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVIICAGVTF
>Mature_139_residues
MKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMALTQGVPSFMQVVDVVTWEMQVEAAILATEIKQQNPQL
HETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVIICAGVTF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose [H]

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=87.0503597122302, Blast_Score=253, Evalue=3e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023064
- InterPro:   IPR007721 [H]

Pfam domain/function: PF05025 RbsD_FucU [H]

EC number: NA

Molecular weight: Translated: 15220; Mature: 15220

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMALTQGVPSFMQVVDVVTW
CCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEHHHHHCCHHHHHHHHHHHH
EMQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVI
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCCCHHHH
RSGECSPYANVIICAGVTF
CCCCCCCCCCEEEEECCCC
>Mature Secondary Structure
MKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMALTQGVPSFMQVVDVVTW
CCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEHHHHHCCHHHHHHHHHHHH
EMQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVI
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCCCHHHH
RSGECSPYANVIICAGVTF
CCCCCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA