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The map label for this gene is yihI

Identifier: 29143917

GI number: 29143917

Start: 3720007

End: 3720522

Strand: Reverse

Name: yihI

Synonym: t3618

Alternate gene names: 29143917

Gene position: 3720522-3720007 (Counterclockwise)

Preceding gene: 29143918

Following gene: 29143916

Centisome position: 77.64

GC content: 52.52

Gene sequence:

>516_bases
ATGAAAAAACCAACCTCTGCACCGCGCAGTAAAGCCTTTGGCAAACAGCGTCGTAAAACGCGTGAAGAGTTAAACCAGGA
GGCGCGCGACCGTAAACGCCTGAAAAAACATCGCGGCCATGCGCCGGGAAGTCGCGCGGCGGGCGGCAATTCCGCTTCGG
GCGGCGGCAATCAGAATCAACAAAAAGATCCACGTATTGGCAGTAAAACACCTGTTCCATTGGGCGTGACTGAAAAAGTG
ACCCAACAGCATAAACCGAAAAGTGAGAAACCTATGCTTTCACCGCAGGCGGAGTTGGATTTACTGGAAACGGATGAGCG
CCTGGATGCGCTGTTAGAACGTCTGGAAGCGGGCGAAACCCTGAGTGCGGAAGATCAAGCCTGGGTAGATGCCAAACTGG
ATCGTATTGATGAACTGATGCAGAAGCTTGGTCTGTCTTACGATGACGACGAAGAAGACGACGAAGAGGACGAGAAGCAG
GAAGATATGATGCGCCTGCTAAGAGGCGGCAACTAA

Upstream 100 bases:

>100_bases
AAAGGCGGCAGATTACTCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGCTAGATTCCGCCTCAATTCTATACTGAATAAAA
CGGCTTAAAGATCTGACATC

Downstream 100 bases:

>100_bases
CGGGTTTACACCGTGGGCTTGCCCGTCCTGCTTATAACCCTTCCGGTTATATGTTATCTGGTGTGGTTATTCGTTAAACT
ACAGCGATTGTCGCGGCGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MKKPTSAPRSKAFGKQRRKTREELNQEARDRKRLKKHRGHAPGSRAAGGNSASGGGNQNQQKDPRIGSKTPVPLGVTEKV
TQQHKPKSEKPMLSPQAELDLLETDERLDALLERLEAGETLSAEDQAWVDAKLDRIDELMQKLGLSYDDDEEDDEEDEKQ
EDMMRLLRGGN

Sequences:

>Translated_171_residues
MKKPTSAPRSKAFGKQRRKTREELNQEARDRKRLKKHRGHAPGSRAAGGNSASGGGNQNQQKDPRIGSKTPVPLGVTEKV
TQQHKPKSEKPMLSPQAELDLLETDERLDALLERLEAGETLSAEDQAWVDAKLDRIDELMQKLGLSYDDDEEDDEEDEKQ
EDMMRLLRGGN
>Mature_171_residues
MKKPTSAPRSKAFGKQRRKTREELNQEARDRKRLKKHRGHAPGSRAAGGNSASGGGNQNQQKDPRIGSKTPVPLGVTEKV
TQQHKPKSEKPMLSPQAELDLLETDERLDALLERLEAGETLSAEDQAWVDAKLDRIDELMQKLGLSYDDDEEDDEEDEKQ
EDMMRLLRGGN

Specific function: A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis

COG id: COG3078

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YihI family

Homologues:

Organism=Escherichia coli, GI1790297, Length=169, Percent_Identity=83.4319526627219, Blast_Score=231, Evalue=2e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YIHI_SALA4 (B5EZX4)

Other databases:

- EMBL:   CP001138
- RefSeq:   YP_002148922.1
- PRIDE:   B5EZX4
- GeneID:   6794357
- GenomeReviews:   CP001138_GR
- KEGG:   sea:SeAg_B4235
- HOGENOM:   HBG303443
- OMA:   AQKKDPR
- ProtClustDB:   PRK05244
- HAMAP:   MF_01058
- InterPro:   IPR007336

Pfam domain/function: PF04220 DUF414

EC number: NA

Molecular weight: Translated: 19214; Mature: 19214

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKPTSAPRSKAFGKQRRKTREELNQEARDRKRLKKHRGHAPGSRAAGGNSASGGGNQNQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
QKDPRIGSKTPVPLGVTEKVTQQHKPKSEKPMLSPQAELDLLETDERLDALLERLEAGET
CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
LSAEDQAWVDAKLDRIDELMQKLGLSYDDDEEDDEEDEKQEDMMRLLRGGN
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKPTSAPRSKAFGKQRRKTREELNQEARDRKRLKKHRGHAPGSRAAGGNSASGGGNQNQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
QKDPRIGSKTPVPLGVTEKVTQQHKPKSEKPMLSPQAELDLLETDERLDALLERLEAGET
CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
LSAEDQAWVDAKLDRIDELMQKLGLSYDDDEEDDEEDEKQEDMMRLLRGGN
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA