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The map label for this gene is lsrE [H]

Identifier: 29143843

GI number: 29143843

Start: 3640918

End: 3641682

Strand: Reverse

Name: lsrE [H]

Synonym: t3538

Alternate gene names: 29143843

Gene position: 3641682-3640918 (Counterclockwise)

Preceding gene: 29143844

Following gene: 29143840

Centisome position: 76.0

GC content: 50.85

Gene sequence:

>765_bases
ATGAACAGCCAGTTTGCCGGATTAACGCGCGAAGCATGTGTGGCATTGTTAGCGTCATATCCGCTTAGTGTGGGTATTCT
GGCAGGGCAGTGGATTGCGTTGCATCGCTATCTGCAACAGTTGGAAGCGTTAAACCAGCCGCTGTTGCATTTGGATTTGA
TGGATGGTCAATTTTGCCCACAGTTTACCGTTGGGCCATGGGCAGTTGGGCAACTGCCGCAAACTTTTATCAAAGATGTT
CATTTGATGGTAGCGGATCAATGGGCGGCGGCGCAAGCCTGCGTGAAAGCGGGCGCACACTGCATCACGCTTCAGGCTGA
AGGCGATATTCATCTGCATCATACGCTAAGCTGGCTTGGTCAGCAGACCGTGCCCGTTATTGACGGTGAAATGCCGGTGA
TCCGGGGGATTAGTTTATGCCCGGCAACGCCTCTGGATGTCATTATCCCTATTCTGAGCGACGTTGAGGTTATTCAACTA
CTGGCAGTGAACCCTGGATACGGCAGTAAAATGCGCTCCAGTGATTTGTACGAGCGCGTGGCACAGCTTCTCTGTCTACT
TGGTGATAAACGCGAAGGTAAAATTATCGTTATTGATGGGTCGTTAACGCAGGATCAGTTGCCTTCGCTGATTGCACAGG
GCATCGATCGTGTTGTTTCTGGTAGTGCGTTATTTCGTGATGATCGGCTGGTTGAGAATACGCGGAGCTGGAGGGCGATG
TTTAAGGTTGCCGGGGATACTACTTTCTTACCCTCCACAGCATAA

Upstream 100 bases:

>100_bases
AACGCCACACTATAAAACTTGCGTGGAGCAGCTTGAACCGTTGATGACCGGTCCGCGGACAAAAAAAGTTTTTATGGGTT
TGATGCCTTAAGGAGCGCTC

Downstream 100 bases:

>100_bases
ATGCCGGATGGCGGCTTTACCTTATCAGGCCTACATAAGCACTCGGCTGGTAGGCCTGATAAGCGCAGCGCCATCAGACA
TTGATTGGCAATTAAGCCTG

Product: epimerase

Products: D-Xylulose 5-phosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MNSQFAGLTREACVALLASYPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQLPQTFIKDV
HLMVADQWAAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIDGEMPVIRGISLCPATPLDVIIPILSDVEVIQL
LAVNPGYGSKMRSSDLYERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALFRDDRLVENTRSWRAM
FKVAGDTTFLPSTA

Sequences:

>Translated_254_residues
MNSQFAGLTREACVALLASYPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQLPQTFIKDV
HLMVADQWAAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIDGEMPVIRGISLCPATPLDVIIPILSDVEVIQL
LAVNPGYGSKMRSSDLYERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALFRDDRLVENTRSWRAM
FKVAGDTTFLPSTA
>Mature_254_residues
MNSQFAGLTREACVALLASYPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQLPQTFIKDV
HLMVADQWAAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIDGEMPVIRGISLCPATPLDVIIPILSDVEVIQL
LAVNPGYGSKMRSSDLYERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALFRDDRLVENTRSWRAM
FKVAGDTTFLPSTA

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Escherichia coli, GI1789788, Length=212, Percent_Identity=25.4716981132075, Blast_Score=80, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17552948, Length=210, Percent_Identity=26.6666666666667, Blast_Score=68, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: 5.1.3.1 [C]

Molecular weight: Translated: 27689; Mature: 27689

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSQFAGLTREACVALLASYPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCP
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
QFTVGPWAVGQLPQTFIKDVHLMVADQWAAAQACVKAGAHCITLQAEGDIHLHHTLSWLG
CCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEHHHHHHHHC
QQTVPVIDGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRSSDLYERV
CCCCCEECCCCCHHHCCCCCCCCHHHHHHHHHCCHHEEHEEEECCCCCCCCCHHHHHHHH
AQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALFRDDRLVENTRSWRAM
HHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHH
FKVAGDTTFLPSTA
HHCCCCCEECCCCC
>Mature Secondary Structure
MNSQFAGLTREACVALLASYPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCP
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
QFTVGPWAVGQLPQTFIKDVHLMVADQWAAAQACVKAGAHCITLQAEGDIHLHHTLSWLG
CCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEHHHHHHHHC
QQTVPVIDGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRSSDLYERV
CCCCCEECCCCCHHHCCCCCCCCHHHHHHHHHCCHHEEHEEEECCCCCCCCCHHHHHHHH
AQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALFRDDRLVENTRSWRAM
HHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHH
FKVAGDTTFLPSTA
HHCCCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): 78000 [C]

Specific activity: NA

Km value (mM): 15 {D-ribulose} 2.4 {D-ribulose-5-phosphate}} [C]

Substrates: D-Ribulose 5-phosphate [C]

Specific reaction: D-Ribulose 5-phosphate <==> D-Xylulose 5-phosphate [C]

General reaction: Epimerization [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA