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The map label for this gene is ygiV [H]

Identifier: 29143438

GI number: 29143438

Start: 3182314

End: 3183180

Strand: Reverse

Name: ygiV [H]

Synonym: t3096

Alternate gene names: 29143438

Gene position: 3183180-3182314 (Counterclockwise)

Preceding gene: 29143439

Following gene: 29143437

Centisome position: 66.43

GC content: 57.67

Gene sequence:

>867_bases
ATGAATGACCTGATCAGCGCGGCTTATTCCGAACGTCTGCGGCGCGTTTGCGACCACATTGAGCGTCATCTGGATGAGCC
TCTGTCGCTTGAGGCGTTAAGCCGGATGGCGCACAGCTCGCCGTTTCATTTTCACCGGCAGTTTACCGTCTGGAGCGGGC
TTCCGCTCTATCGCTATATCCAGTGGCTGCGTTTGCGCCGGGCGTCATGGCGGCTGGCGTTTAATCCGCAAGATAAAGTT
ATCGATATCGCGCTGGATGCCGGATTTCAGAATCCGGAGTCGTTCACACGTGCTTTCAAAACCGCGTTTGGTCAAAGCCC
GTGCCGGTTTCGGCAATCGCCGGACTGGCTGGCCTGGCACCAACGCGTTCCTAAACTTGCGTTACAGGAGCAGCATGTCA
TGGACGTAAAAATCGTTGAATTTCCTCCTACCCGCGTCGCGATGCTGACGCATCTGGGGCATCCGGATAAGGTCAACGCC
AGCGCGGCGAAATTTATTGCATGGCGACGCGAAACGGGCCAGTCGCCGATTGCCAGCAGTCAAACTTTTGGTATTGCCTG
GCACGACCCGCAGACGACGCCGCCGGCTCAATTCCGCTTTGATATCTGCGGCAGCGTCCGCCAGCCGATAGCCGAAAATG
ACGTTGGCGTGGTGAATAGCGAGATTCCTGGCGGGCGCTGCGCGGTGGTGCGCCATCAGGGATCGCTCGACAGCCTCCCG
GAGAGCGTGTGGTATTTATTCCGCGAATGGCTACCGGCCAGCGGCGAGACGCTGCGCGATTTTCCGGTCTTCTTCCAGTA
CCTGAATTTCGTCCATGAGGTGGCGGAACATGAGCTGCTGACGGATATCTATCTGCCGCTTCGTTAA

Upstream 100 bases:

>100_bases
TGAAACAGATTCGTAAAGTGAATCCGTAATCCCACATTGCGCAAGATCGGTCAGGATTCACAGCCGCCCGGTGGGCAGAA
TAGGCCACAAGGAGGCAGTG

Downstream 100 bases:

>100_bases
CTTCCTCGCAACCTGTCTCACGGTTTGTGACTCAGACCGTGAGATAGGGTATTATCTGCGGCAATATTGCCGTCCGAACG
GTCAGCATGCAGATTGAGGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MNDLISAAYSERLRRVCDHIERHLDEPLSLEALSRMAHSSPFHFHRQFTVWSGLPLYRYIQWLRLRRASWRLAFNPQDKV
IDIALDAGFQNPESFTRAFKTAFGQSPCRFRQSPDWLAWHQRVPKLALQEQHVMDVKIVEFPPTRVAMLTHLGHPDKVNA
SAAKFIAWRRETGQSPIASSQTFGIAWHDPQTTPPAQFRFDICGSVRQPIAENDVGVVNSEIPGGRCAVVRHQGSLDSLP
ESVWYLFREWLPASGETLRDFPVFFQYLNFVHEVAEHELLTDIYLPLR

Sequences:

>Translated_288_residues
MNDLISAAYSERLRRVCDHIERHLDEPLSLEALSRMAHSSPFHFHRQFTVWSGLPLYRYIQWLRLRRASWRLAFNPQDKV
IDIALDAGFQNPESFTRAFKTAFGQSPCRFRQSPDWLAWHQRVPKLALQEQHVMDVKIVEFPPTRVAMLTHLGHPDKVNA
SAAKFIAWRRETGQSPIASSQTFGIAWHDPQTTPPAQFRFDICGSVRQPIAENDVGVVNSEIPGGRCAVVRHQGSLDSLP
ESVWYLFREWLPASGETLRDFPVFFQYLNFVHEVAEHELLTDIYLPLR
>Mature_288_residues
MNDLISAAYSERLRRVCDHIERHLDEPLSLEALSRMAHSSPFHFHRQFTVWSGLPLYRYIQWLRLRRASWRLAFNPQDKV
IDIALDAGFQNPESFTRAFKTAFGQSPCRFRQSPDWLAWHQRVPKLALQEQHVMDVKIVEFPPTRVAMLTHLGHPDKVNA
SAAKFIAWRRETGQSPIASSQTFGIAWHDPQTTPPAQFRFDICGSVRQPIAENDVGVVNSEIPGGRCAVVRHQGSLDSLP
ESVWYLFREWLPASGETLRDFPVFFQYLNFVHEVAEHELLTDIYLPLR

Specific function: Represses expression of mcbR [H]

COG id: COG3449

COG function: function code L; DNA gyrase inhibitor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI48994918, Length=155, Percent_Identity=54.8387096774194, Blast_Score=184, Evalue=5e-48,
Organism=Escherichia coli, GI1790857, Length=134, Percent_Identity=36.5671641791045, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind [H]

EC number: NA

Molecular weight: Translated: 33285; Mature: 33285

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDLISAAYSERLRRVCDHIERHLDEPLSLEALSRMAHSSPFHFHRQFTVWSGLPLYRYI
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCHHHHH
QWLRLRRASWRLAFNPQDKVIDIALDAGFQNPESFTRAFKTAFGQSPCRFRQSPDWLAWH
HHHHHHHHCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
QRVPKLALQEQHVMDVKIVEFPPTRVAMLTHLGHPDKVNASAAKFIAWRRETGQSPIASS
HHCHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
QTFGIAWHDPQTTPPAQFRFDICGSVRQPIAENDVGVVNSEIPGGRCAVVRHQGSLDSLP
CEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCEEEEEEECCCHHHHH
ESVWYLFREWLPASGETLRDFPVFFQYLNFVHEVAEHELLTDIYLPLR
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNDLISAAYSERLRRVCDHIERHLDEPLSLEALSRMAHSSPFHFHRQFTVWSGLPLYRYI
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCHHHHH
QWLRLRRASWRLAFNPQDKVIDIALDAGFQNPESFTRAFKTAFGQSPCRFRQSPDWLAWH
HHHHHHHHCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
QRVPKLALQEQHVMDVKIVEFPPTRVAMLTHLGHPDKVNASAAKFIAWRRETGQSPIASS
HHCHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
QTFGIAWHDPQTTPPAQFRFDICGSVRQPIAENDVGVVNSEIPGGRCAVVRHQGSLDSLP
CEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCEEEEEEECCCHHHHH
ESVWYLFREWLPASGETLRDFPVFFQYLNFVHEVAEHELLTDIYLPLR
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]