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The map label for this gene is yqhC [H]

Identifier: 29143426

GI number: 29143426

Start: 3164222

End: 3165142

Strand: Reverse

Name: yqhC [H]

Synonym: t3083

Alternate gene names: 29143426

Gene position: 3165142-3164222 (Counterclockwise)

Preceding gene: 29143430

Following gene: 29143423

Centisome position: 66.05

GC content: 51.03

Gene sequence:

>921_bases
TTGATAAAAAAATGGCGCGTTATGAATCGTGAAGCAATTTGCTTACAGTTGGCTGATAAAATTAATCATTTAAAAAATAA
TGATAAAATAATCAGCGAGCGGCTGGCGGGCATTCGTCTGTTGTATGGTGTTGAACCGGGGCCGCGCACGCCGGTCATGT
ATCAGCCTGGCATCATATTTCTCTTTTCCGGCCATAAAATTGGCTATATTAACAAGCGCAAGTTTCGTTATGACGCTAAT
GAATATCTCTTACTGACCGTGCCGCTCCCTTTTGAATGCGAGACCTGGGCGACGCCGGAGGTACCGCTGGCCGGTATTCG
GCTCGACATTGATGTGCTGCAACTGCAAGAGTTGCTCATGGACATTGGCGAAGATGAGCGTTTCCAGTTGCCGATGGCGG
CCAGCGGGATTAACTCCGCCACGCTGTCGGACGAGATTTTATGCGCGGTGGAAAGATTGTTGGATGTGATGGAGCACCCG
CTGGATGCGCGGATTCTGGGAAAACAGATTATTCGCGAAATTCTTTATCATGTGCTGATGGGGCCGCGCGGCGGGGCGCT
GCTTGCGCTGGTTAGTCGCCAGACGCACTTTAGCCTGATCAGTCGCGTACTTAAACAGATCGAAATGAAATACACCGAGA
ACCTGAATGTTGAGCAACTGGCGGCAGAAGCGAACATGAGCGTGTCGGCGTTTCACCATAATTTTAAGGCGGTCACCAGC
ACCTCGCCGTTGCAGTATTTAAAAAGCTACCGACTGCATAAAGCGCGGATGATGATGATTCACGACGGTATGAAGGCCAG
CGCCGCGGCGATGCGGGTCGGCTATGAGAGCGCATCGCAGTTTAGCCGGGAGTTTAAACGTTATTTTGGCGTTACGCCGG
GCGAAGATGCGGCAAGAATGCGGACAATGCAAGGGAGCTAA

Upstream 100 bases:

>100_bases
GAGAGATGTCTCTCAATGCACATTTCTGCCAATGTTTTGCCTATTTCTCCAGAATGCTGGAGAAAATCGCTAAAAATGCG
CACAATCCAGCGGAGTGGAT

Downstream 100 bases:

>100_bases
GTGGGGCATCCCGCCACGGGGCAACGAAGCGTAACCGGGCCATCCTGGCCGATTATGGATACGTCAGGCGTTACAGTATT
TCTTTTTAATCACCACGACC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MIKKWRVMNREAICLQLADKINHLKNNDKIISERLAGIRLLYGVEPGPRTPVMYQPGIIFLFSGHKIGYINKRKFRYDAN
EYLLLTVPLPFECETWATPEVPLAGIRLDIDVLQLQELLMDIGEDERFQLPMAASGINSATLSDEILCAVERLLDVMEHP
LDARILGKQIIREILYHVLMGPRGGALLALVSRQTHFSLISRVLKQIEMKYTENLNVEQLAAEANMSVSAFHHNFKAVTS
TSPLQYLKSYRLHKARMMMIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDAARMRTMQGS

Sequences:

>Translated_306_residues
MIKKWRVMNREAICLQLADKINHLKNNDKIISERLAGIRLLYGVEPGPRTPVMYQPGIIFLFSGHKIGYINKRKFRYDAN
EYLLLTVPLPFECETWATPEVPLAGIRLDIDVLQLQELLMDIGEDERFQLPMAASGINSATLSDEILCAVERLLDVMEHP
LDARILGKQIIREILYHVLMGPRGGALLALVSRQTHFSLISRVLKQIEMKYTENLNVEQLAAEANMSVSAFHHNFKAVTS
TSPLQYLKSYRLHKARMMMIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDAARMRTMQGS
>Mature_306_residues
MIKKWRVMNREAICLQLADKINHLKNNDKIISERLAGIRLLYGVEPGPRTPVMYQPGIIFLFSGHKIGYINKRKFRYDAN
EYLLLTVPLPFECETWATPEVPLAGIRLDIDVLQLQELLMDIGEDERFQLPMAASGINSATLSDEILCAVERLLDVMEHP
LDARILGKQIIREILYHVLMGPRGGALLALVSRQTHFSLISRVLKQIEMKYTENLNVEQLAAEANMSVSAFHHNFKAVTS
TSPLQYLKSYRLHKARMMMIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDAARMRTMQGS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=304, Percent_Identity=83.8815789473684, Blast_Score=523, Evalue=1e-150,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34786; Mature: 34786

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKWRVMNREAICLQLADKINHLKNNDKIISERLAGIRLLYGVEPGPRTPVMYQPGIIF
CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEEEECCCCCCCCEEECCCEEE
LFSGHKIGYINKRKFRYDANEYLLLTVPLPFECETWATPEVPLAGIRLDIDVLQLQELLM
EECCCEEEEEECEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHH
DIGEDERFQLPMAASGINSATLSDEILCAVERLLDVMEHPLDARILGKQIIREILYHVLM
HCCCCCEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
GPRGGALLALVSRQTHFSLISRVLKQIEMKYTENLNVEQLAAEANMSVSAFHHNFKAVTS
CCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHCCCCEECC
TSPLQYLKSYRLHKARMMMIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDAARM
CCHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHH
RTMQGS
HHCCCC
>Mature Secondary Structure
MIKKWRVMNREAICLQLADKINHLKNNDKIISERLAGIRLLYGVEPGPRTPVMYQPGIIF
CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEEEECCCCCCCCEEECCCEEE
LFSGHKIGYINKRKFRYDANEYLLLTVPLPFECETWATPEVPLAGIRLDIDVLQLQELLM
EECCCEEEEEECEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHH
DIGEDERFQLPMAASGINSATLSDEILCAVERLLDVMEHPLDARILGKQIIREILYHVLM
HCCCCCEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
GPRGGALLALVSRQTHFSLISRVLKQIEMKYTENLNVEQLAAEANMSVSAFHHNFKAVTS
CCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHCCCCEECC
TSPLQYLKSYRLHKARMMMIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDAARM
CCHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHH
RTMQGS
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]