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The map label for this gene is exbD [H]

Identifier: 29143421

GI number: 29143421

Start: 3160754

End: 3161179

Strand: Reverse

Name: exbD [H]

Synonym: t3078

Alternate gene names: 29143421

Gene position: 3161179-3160754 (Counterclockwise)

Preceding gene: 29143422

Following gene: 29143417

Centisome position: 65.97

GC content: 50.23

Gene sequence:

>426_bases
ATGGCAATGCGTCTTAACGAGAACCTGGATGACAACGGCGAAATGCATGAAATCAACGTGACGCCGTTTATCGATGTCAT
GTTGGTTCTGCTGATTATCTTTATGGTGGCTGCGCCGCTGGCGACGGTGGACGTCAAGGTGAATCTGCCCGCTTCTACCA
GTACGCCACAGCCGCGTCCGGAAAAACCGGTTTATCTGTCGGTGAAAGCGGATAACACCATGTTTATCGGTAACGATCCG
GTGACGGATGATACGATGATTGCCGAGCTAACGGCCCTGACGGAAGGGAAAAAGGATACTACGATTTTCTTCCGTGCGGA
TAAAACCGTAGAGTATGAAACCCTGATGAAAGTGATGGATATGCTGCATCAGGCGGGCTATCTCAAGATTGGTTTGGTCG
GCGAAGAGACCGCGAAAGCGAAATAA

Upstream 100 bases:

>100_bases
GCAGGTATTGCTGCTGCAAAGCCGCGATCTTGATCTGAATGCGAGCGCCAGTGCGCAGCCGGTACGCGCCGCGCAGAAAT
TACGGGTAGGGTAATGCGTC

Downstream 100 bases:

>100_bases
GTATTCTGCTGATGCTGTAGGCCGGGTAAGGCGAAGTCGCCACCCGGCTTTTTTATTGCCTAAGATGGCGCCTTGCTTAA
CAGAATTGCGCCACCTTAAT

Product: biopolymer transport protein ExbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MAMRLNENLDDNGEMHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRPEKPVYLSVKADNTMFIGNDP
VTDDTMIAELTALTEGKKDTTIFFRADKTVEYETLMKVMDMLHQAGYLKIGLVGEETAKAK

Sequences:

>Translated_141_residues
MAMRLNENLDDNGEMHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRPEKPVYLSVKADNTMFIGNDP
VTDDTMIAELTALTEGKKDTTIFFRADKTVEYETLMKVMDMLHQAGYLKIGLVGEETAKAK
>Mature_140_residues
AMRLNENLDDNGEMHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRPEKPVYLSVKADNTMFIGNDPV
TDDTMIAELTALTEGKKDTTIFFRADKTVEYETLMKVMDMLHQAGYLKIGLVGEETAKAK

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=141, Percent_Identity=93.6170212765958, Blast_Score=269, Evalue=6e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15619; Mature: 15488

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.1 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.4 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMRLNENLDDNGEMHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRP
CCEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC
EKPVYLSVKADNTMFIGNDPVTDDTMIAELTALTEGKKDTTIFFRADKTVEYETLMKVMD
CCCEEEEEECCCEEEECCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHH
MLHQAGYLKIGLVGEETAKAK
HHHHCCCEEEEEECCCCCCCC
>Mature Secondary Structure 
AMRLNENLDDNGEMHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRP
CEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC
EKPVYLSVKADNTMFIGNDPVTDDTMIAELTALTEGKKDTTIFFRADKTVEYETLMKVMD
CCCEEEEEECCCEEEECCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHH
MLHQAGYLKIGLVGEETAKAK
HHHHCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]