Click here to switch to the map view.

The map label for this gene is yciM [H]

Identifier: 29142057

GI number: 29142057

Start: 1676990

End: 1678159

Strand: Reverse

Name: yciM [H]

Synonym: t1621

Alternate gene names: 29142057

Gene position: 1678159-1676990 (Counterclockwise)

Preceding gene: 29142058

Following gene: 29142056

Centisome position: 35.02

GC content: 51.62

Gene sequence:

>1170_bases
ATGTTGGAGTTGTTATTTCTGCTGTTGCCTGTAGCCGCTGCCTATGGGTGGTATATGGGTCGCAGAAGTGCGCAACAAAC
AAAACAGGATGAAGCTAACCGCCTGTCGCGCGATTATGTCGCAGGGGTTAACTTCCTGCTGAGTAACCAACAAGATAAAG
CGGTGGATCTGTTCCTCGATATGCTTAAAGAGGATACCGGCACCGTTGAGGCTCATCTCACTCTCGGTAATTTGTTTCGC
TCTCGCGGCGAAGTCGATCGCGCCATTCGTATTCATCAAACGCTCATGGAAAGCGCTTCATTGACCTATGAACAGCGTTT
ACTGGCTGTTCAGCAACTGGGGCGCGACTATATGGCCGCCGGTTTATATGACCGCGCGGAAGATATGTTTAACCAACTTA
CCGACGAAACGGAATTTCGCGTAGGCGCGTTACAGCAGCTCTTGCAAATCTATCAGCTAACCAGCGACTGGCAAAAGGCG
ATCGAAGTAGCAGAACGGCTGGTGAAACTGGGCAAAGATAAACAGCGTATCGAAATCGCCCACTTTTACTGTGAGTTAGC
GTTACAGCAGATGGGCAACGACGACATGGATCGCGCGATGGCGTTGCTGAAAAAAGGTGCCGCCGCAGATAAAAATAGCG
CCCGGGTGTCTATCATGATGGGGCGCGTTTATATGGCGAGAGGGGATTACGCCAAAGCGGTCGAAAGCCTGCAACGTGTG
ATCGTTCAGGATAAAGAGCTGGTCAGCGAAACGCTGGAGATGTTGCAAACCTGTTATCAACAGCTCGGTAAAAATGCCGA
GTGGGCGGAGTTTTTACGTCGCGCCGTTGAGGAGAATACCGGTGCTGGCGCTGAGTTAATGCTTGCCGATATTCTGGAAG
CGCGTGAAGGTAGTGACGCAGCTCAAGTCTATATCACGCGTCAGCTACAGCGACATCCTACCATGCGGGTGTTCCATAAG
CTGATGGATTACCATCTCAATGAGGCGGAAGAAGGGCGAGCGAAAGAAAGCCTGATGGTACTGCGTGATATGGTTGGCGA
GCAGGTGCGCAGTAAACCGCGGTATCGTTGTCAGAAATGCGGTTTTACCGCCTATACCTTGTACTGGCACTGTCCGTCCT
GCCGGGCATGGTCGACCATTAAACCTATTCGCGGACTTGATGGGCAGTAG

Upstream 100 bases:

>100_bases
CCGCGCTGAACGTAAAATTAAACGACTGGAAAACAAGCTCTCGCCAGCAACCGACGTTGCGGTCCCTGCCGATTCGTCGG
TTGTAAAGGAATAATCATTT

Downstream 100 bases:

>100_bases
TATATAAAAAAAACCTCACTTTAGTTACAACATACTTAATGACATAAGACAAGAAACGACGCTGGCATCGGCGGCCAGGG
CTTATCAGGTTGTCAATCGA

Product: tetratricopeptide repeat protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MLELLFLLLPVAAAYGWYMGRRSAQQTKQDEANRLSRDYVAGVNFLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFR
SRGEVDRAIRIHQTLMESASLTYEQRLLAVQQLGRDYMAAGLYDRAEDMFNQLTDETEFRVGALQQLLQIYQLTSDWQKA
IEVAERLVKLGKDKQRIEIAHFYCELALQQMGNDDMDRAMALLKKGAAADKNSARVSIMMGRVYMARGDYAKAVESLQRV
IVQDKELVSETLEMLQTCYQQLGKNAEWAEFLRRAVEENTGAGAELMLADILEAREGSDAAQVYITRQLQRHPTMRVFHK
LMDYHLNEAEEGRAKESLMVLRDMVGEQVRSKPRYRCQKCGFTAYTLYWHCPSCRAWSTIKPIRGLDGQ

Sequences:

>Translated_389_residues
MLELLFLLLPVAAAYGWYMGRRSAQQTKQDEANRLSRDYVAGVNFLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFR
SRGEVDRAIRIHQTLMESASLTYEQRLLAVQQLGRDYMAAGLYDRAEDMFNQLTDETEFRVGALQQLLQIYQLTSDWQKA
IEVAERLVKLGKDKQRIEIAHFYCELALQQMGNDDMDRAMALLKKGAAADKNSARVSIMMGRVYMARGDYAKAVESLQRV
IVQDKELVSETLEMLQTCYQQLGKNAEWAEFLRRAVEENTGAGAELMLADILEAREGSDAAQVYITRQLQRHPTMRVFHK
LMDYHLNEAEEGRAKESLMVLRDMVGEQVRSKPRYRCQKCGFTAYTLYWHCPSCRAWSTIKPIRGLDGQ
>Mature_389_residues
MLELLFLLLPVAAAYGWYMGRRSAQQTKQDEANRLSRDYVAGVNFLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFR
SRGEVDRAIRIHQTLMESASLTYEQRLLAVQQLGRDYMAAGLYDRAEDMFNQLTDETEFRVGALQQLLQIYQLTSDWQKA
IEVAERLVKLGKDKQRIEIAHFYCELALQQMGNDDMDRAMALLKKGAAADKNSARVSIMMGRVYMARGDYAKAVESLQRV
IVQDKELVSETLEMLQTCYQQLGKNAEWAEFLRRAVEENTGAGAELMLADILEAREGSDAAQVYITRQLQRHPTMRVFHK
LMDYHLNEAEEGRAKESLMVLRDMVGEQVRSKPRYRCQKCGFTAYTLYWHCPSCRAWSTIKPIRGLDGQ

Specific function: Unknown

COG id: COG2956

COG function: function code G; Predicted N-acetylglucosaminyl transferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI2367116, Length=379, Percent_Identity=93.4036939313984, Blast_Score=745, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44565; Mature: 44565

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELLFLLLPVAAAYGWYMGRRSAQQTKQDEANRLSRDYVAGVNFLLSNQQDKAVDLFLD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
MLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQTLMESASLTYEQRLLAVQQLGRDYMAA
HHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
GLYDRAEDMFNQLTDETEFRVGALQQLLQIYQLTSDWQKAIEVAERLVKLGKDKQRIEIA
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
HFYCELALQQMGNDDMDRAMALLKKGAAADKNSARVSIMMGRVYMARGDYAKAVESLQRV
HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHCCCHHHHHHHHHHH
IVQDKELVSETLEMLQTCYQQLGKNAEWAEFLRRAVEENTGAGAELMLADILEAREGSDA
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCH
AQVYITRQLQRHPTMRVFHKLMDYHLNEAEEGRAKESLMVLRDMVGEQVRSKPRYRCQKC
HHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHC
GFTAYTLYWHCPSCRAWSTIKPIRGLDGQ
CCEEEEEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLELLFLLLPVAAAYGWYMGRRSAQQTKQDEANRLSRDYVAGVNFLLSNQQDKAVDLFLD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
MLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQTLMESASLTYEQRLLAVQQLGRDYMAA
HHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
GLYDRAEDMFNQLTDETEFRVGALQQLLQIYQLTSDWQKAIEVAERLVKLGKDKQRIEIA
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
HFYCELALQQMGNDDMDRAMALLKKGAAADKNSARVSIMMGRVYMARGDYAKAVESLQRV
HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHCCCHHHHHHHHHHH
IVQDKELVSETLEMLQTCYQQLGKNAEWAEFLRRAVEENTGAGAELMLADILEAREGSDA
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCH
AQVYITRQLQRHPTMRVFHKLMDYHLNEAEEGRAKESLMVLRDMVGEQVRSKPRYRCQKC
HHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHC
GFTAYTLYWHCPSCRAWSTIKPIRGLDGQ
CCEEEEEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]