Click here to switch to the map view.

The map label for this gene is yddE [H]

Identifier: 29141935

GI number: 29141935

Start: 1543076

End: 1543969

Strand: Direct

Name: yddE [H]

Synonym: t1491

Alternate gene names: 29141935

Gene position: 1543076-1543969 (Clockwise)

Preceding gene: 29141934

Following gene: 29141938

Centisome position: 32.2

GC content: 53.24

Gene sequence:

>894_bases
ATGAAACCGCAGATTTACCATGTTGACGCCTTCACCAGCGAACCCTTTCGCGGCAACTCTGCTGGCGTTGTCTTACATGC
GGATACGCTAAGCGACGCGCAGATGCAGCTGATTGCCCGTGAACTTCGTCACTCGGAAACCGCCTTTTTGCTAAAAAGCG
AAGAGAGTGATGTGCGCATACGCTACTTTACACCGACAGTAGAAGTCCCCATCTGTGGTCATGCCACTGTGGCCGCGCAT
TATGTTCGGGCAACGGTACTGGGGTTGGGAAACACCACCGTCTGGCAAACCTCGTTAGCGGGCCGTCATCGCGTTGAAAT
TCATGCCGAACACAACGACTATCGCATCACGCTGGAACAAGGTCAGCCCTCTTTTGAACCACCGCTAGTCGGAGAGATTC
GGGCTGCCATCATCACCGCACTGAACCTGACTGAAGATGATATCGTGCCGGGAGCGCCAATTCAGGTGGCTTCAACAGGA
CATGCAAAAGTGATGATCCTGCTCAAACCAGACGTTGATATTGATGCCCTTTCGCCGAATCTGGCAGCCCTGACGGCAAT
CAGCCAGCAAATTGGCTGTAACGGCTTTTTTCCTTTCCAGATTCGTCCGGGAAAAAACGAAACCGATGGGCGAATGTTTT
CCCCGGCGATAGGAATTGTGGAAGATCCGGTAACGGGAAACGCCAATGGCCCGATGGGGGCATGGCTCGTCCATCATGGC
CTGATGGCGCATGACGGTAAAACGCTACAGATTCAAGGCCATCAGGGGCGCGCTTTAGGCAAAGAGGGTACTGTTGATGT
TACCGTCACCATTCGCGATAACCAGCCGGAAAACGTCACCATCTCCGGCCAGGCGGTCATTCTGTTTCATGCCGAATGGG
CCATTACTTTTTAA

Upstream 100 bases:

>100_bases
TTTGACCGGGGGTACGCTTACCGGGCAAAGAAAAACGCCTGGGCGTCGTCATTCGGCAACGCACAGGCTATGATGATTCT
TCAGTCAAAGGAGAACATCA

Downstream 100 bases:

>100_bases
TCTTTGTCAGGCCCGCAAATCCTCGCGGCAAAAAATTATTTTCCCGCCTCCGGATGGGTATCAAATGCAGCCATTACCGC
GGCCAGCTCCGCCTCGGTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MKPQIYHVDAFTSEPFRGNSAGVVLHADTLSDAQMQLIARELRHSETAFLLKSEESDVRIRYFTPTVEVPICGHATVAAH
YVRATVLGLGNTTVWQTSLAGRHRVEIHAEHNDYRITLEQGQPSFEPPLVGEIRAAIITALNLTEDDIVPGAPIQVASTG
HAKVMILLKPDVDIDALSPNLAALTAISQQIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGPMGAWLVHHG
LMAHDGKTLQIQGHQGRALGKEGTVDVTVTIRDNQPENVTISGQAVILFHAEWAITF

Sequences:

>Translated_297_residues
MKPQIYHVDAFTSEPFRGNSAGVVLHADTLSDAQMQLIARELRHSETAFLLKSEESDVRIRYFTPTVEVPICGHATVAAH
YVRATVLGLGNTTVWQTSLAGRHRVEIHAEHNDYRITLEQGQPSFEPPLVGEIRAAIITALNLTEDDIVPGAPIQVASTG
HAKVMILLKPDVDIDALSPNLAALTAISQQIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGPMGAWLVHHG
LMAHDGKTLQIQGHQGRALGKEGTVDVTVTIRDNQPENVTISGQAVILFHAEWAITF
>Mature_297_residues
MKPQIYHVDAFTSEPFRGNSAGVVLHADTLSDAQMQLIARELRHSETAFLLKSEESDVRIRYFTPTVEVPICGHATVAAH
YVRATVLGLGNTTVWQTSLAGRHRVEIHAEHNDYRITLEQGQPSFEPPLVGEIRAAIITALNLTEDDIVPGAPIQVASTG
HAKVMILLKPDVDIDALSPNLAALTAISQQIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGPMGAWLVHHG
LMAHDGKTLQIQGHQGRALGKEGTVDVTVTIRDNQPENVTISGQAVILFHAEWAITF

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=289, Percent_Identity=32.1799307958478, Blast_Score=99, Evalue=6e-21,
Organism=Homo sapiens, GI74316009, Length=270, Percent_Identity=32.5925925925926, Blast_Score=97, Evalue=2e-20,
Organism=Escherichia coli, GI1787737, Length=295, Percent_Identity=82.0338983050847, Blast_Score=511, Evalue=1e-146,
Organism=Caenorhabditis elegans, GI17542160, Length=269, Percent_Identity=26.3940520446097, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17542154, Length=269, Percent_Identity=26.3940520446097, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17542158, Length=266, Percent_Identity=30.0751879699248, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17542152, Length=266, Percent_Identity=30.0751879699248, Blast_Score=71, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6321818, Length=294, Percent_Identity=27.2108843537415, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 32196; Mature: 32196

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPQIYHVDAFTSEPFRGNSAGVVLHADTLSDAQMQLIARELRHSETAFLLKSEESDVRI
CCCEEEEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCEEE
RYFTPTVEVPICGHATVAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHAEHNDYRITLEQ
EEECCEEEEEECCCHHHHHHEEEEEEEECCCCEEEEECCCCCEEEEEEEECCCEEEEEEC
GQPSFEPPLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMILLKPDVDIDALSPN
CCCCCCCCCHHHHHEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEEECCCCCEECCCCC
LAALTAISQQIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGPMGAWLVHHG
HHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEECCCCCEEECCCCCCCCCCCHHHHHHCC
LMAHDGKTLQIQGHQGRALGKEGTVDVTVTIRDNQPENVTISGQAVILFHAEWAITF
EEECCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEECCCEEEEEEEEEEEEC
>Mature Secondary Structure
MKPQIYHVDAFTSEPFRGNSAGVVLHADTLSDAQMQLIARELRHSETAFLLKSEESDVRI
CCCEEEEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCEEE
RYFTPTVEVPICGHATVAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHAEHNDYRITLEQ
EEECCEEEEEECCCHHHHHHEEEEEEEECCCCEEEEECCCCCEEEEEEEECCCEEEEEEC
GQPSFEPPLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMILLKPDVDIDALSPN
CCCCCCCCCHHHHHEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEEECCCCCEECCCCC
LAALTAISQQIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGPMGAWLVHHG
HHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEECCCCCEEECCCCCCCCCCCHHHHHHCC
LMAHDGKTLQIQGHQGRALGKEGTVDVTVTIRDNQPENVTISGQAVILFHAEWAITF
EEECCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEECCCEEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677609; 1569093 [H]