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The map label for this gene is ynfC [H]

Identifier: 29141874

GI number: 29141874

Start: 1468392

End: 1469102

Strand: Direct

Name: ynfC [H]

Synonym: t1422

Alternate gene names: 29141874

Gene position: 1468392-1469102 (Clockwise)

Preceding gene: 29141863

Following gene: 29141877

Centisome position: 30.64

GC content: 50.49

Gene sequence:

>711_bases
GTGAAGAAACCCCTTTTACTGACGTTATTGTGCATGATACTGGCAGGTTGTGATAACCCGAAATCCCCCGAGTCTTTTAC
GCCGGAAATGGCCAGTTTTTCGAACGAATTTGATTTTGATCCATTACGTGGTCCGGTAAAGGATTTCAGCCAGACGTTGA
TGAGTGAGAATGGCGAAGTGGCGAAGCAGGTCACCGGTACGCTTTCACAGGAAGGCTGTTTTGATACGCTTGAGTTACAC
GATCTGGAGAATAATACGGGGCTGGCGCTCGTGCTGGATGCTAATTATTACCGGGATGCTCAGACGCTGGAAAAAAAGGT
GCAGTTACAGGGGAAGTGCCAGCTGGCGGCGTTGCCTTCGGCGGGCGTGACTTGGGAAACGGACGACAACGGTTTTGTGG
TATCGGCGACGGGCAAAGAGATGAAGGTCGAGTACCGCTATGATAGCGAAGGTTATCCGTTAGGTAAGACAACCATAAAC
TCGCAGAATACGCTCTCTGTGACGGCAAAACTCTCCACGGACTCCCGTAAAAAGCTGGATTATACGGCAGTCAGCCGGGT
GGATGATCGACAGGTCGGCAACGTCACACAGAGCTGCGAATATGATGCGTACGCGAACCCTGTTGACTGCCGGCTTGTTA
TCGTCGATGAGAGCGTTAAGCCGGCAGTGTCCCACCATTACACCATTAAAAATCGTATCGATTACTACTAA

Upstream 100 bases:

>100_bases
CTCCTGTGATTAATGACGATGTTCTAAGCTTAGCATTTTTCGTGTAAATAACTGTATTTGCTAATATGATGATAAATATC
TTTTCATCCTGGTGACACGC

Downstream 100 bases:

>100_bases
ACCGGGCGCGGTGCGACTCTCCGTGACTACCGCGCCGCGCTTACTGCGCGGTGGGTTTCAGGAGCGTAGAACTGGACGTT
TTATGTTCATCCAGATACTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MKKPLLLTLLCMILAGCDNPKSPESFTPEMASFSNEFDFDPLRGPVKDFSQTLMSENGEVAKQVTGTLSQEGCFDTLELH
DLENNTGLALVLDANYYRDAQTLEKKVQLQGKCQLAALPSAGVTWETDDNGFVVSATGKEMKVEYRYDSEGYPLGKTTIN
SQNTLSVTAKLSTDSRKKLDYTAVSRVDDRQVGNVTQSCEYDAYANPVDCRLVIVDESVKPAVSHHYTIKNRIDYY

Sequences:

>Translated_236_residues
MKKPLLLTLLCMILAGCDNPKSPESFTPEMASFSNEFDFDPLRGPVKDFSQTLMSENGEVAKQVTGTLSQEGCFDTLELH
DLENNTGLALVLDANYYRDAQTLEKKVQLQGKCQLAALPSAGVTWETDDNGFVVSATGKEMKVEYRYDSEGYPLGKTTIN
SQNTLSVTAKLSTDSRKKLDYTAVSRVDDRQVGNVTQSCEYDAYANPVDCRLVIVDESVKPAVSHHYTIKNRIDYY
>Mature_236_residues
MKKPLLLTLLCMILAGCDNPKSPESFTPEMASFSNEFDFDPLRGPVKDFSQTLMSENGEVAKQVTGTLSQEGCFDTLELH
DLENNTGLALVLDANYYRDAQTLEKKVQLQGKCQLAALPSAGVTWETDDNGFVVSATGKEMKVEYRYDSEGYPLGKTTIN
SQNTLSVTAKLSTDSRKKLDYTAVSRVDDRQVGNVTQSCEYDAYANPVDCRLVIVDESVKPAVSHHYTIKNRIDYY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0257 family [H]

Homologues:

Organism=Escherichia coli, GI87081939, Length=236, Percent_Identity=72.0338983050847, Blast_Score=357, Evalue=1e-100,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010646
- ProDom:   PD120112 [H]

Pfam domain/function: PF06788 UPF0257 [H]

EC number: NA

Molecular weight: Translated: 26223; Mature: 26223

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKPLLLTLLCMILAGCDNPKSPESFTPEMASFSNEFDFDPLRGPVKDFSQTLMSENGEV
CCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHH
AKQVTGTLSQEGCFDTLELHDLENNTGLALVLDANYYRDAQTLEKKVQLQGKCQLAALPS
HHHHHHCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCC
AGVTWETDDNGFVVSATGKEMKVEYRYDSEGYPLGKTTINSQNTLSVTAKLSTDSRKKLD
CCCEEEECCCCEEEEECCCEEEEEEEECCCCCCCCCEEECCCCEEEEEEEECCCCCHHCC
YTAVSRVDDRQVGNVTQSCEYDAYANPVDCRLVIVDESVKPAVSHHYTIKNRIDYY
HHHHHCCCCHHHCCHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHEEEECCCCCCC
>Mature Secondary Structure
MKKPLLLTLLCMILAGCDNPKSPESFTPEMASFSNEFDFDPLRGPVKDFSQTLMSENGEV
CCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHH
AKQVTGTLSQEGCFDTLELHDLENNTGLALVLDANYYRDAQTLEKKVQLQGKCQLAALPS
HHHHHHCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCC
AGVTWETDDNGFVVSATGKEMKVEYRYDSEGYPLGKTTINSQNTLSVTAKLSTDSRKKLD
CCCEEEECCCCEEEEECCCEEEEEEEECCCCCCCCCEEECCCCEEEEEEEECCCCCHHCC
YTAVSRVDDRQVGNVTQSCEYDAYANPVDCRLVIVDESVKPAVSHHYTIKNRIDYY
HHHHHCCCCHHHCCHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA