Click here to switch to the map view.

The map label for this gene is ydgA [H]

Identifier: 29141791

GI number: 29141791

Start: 1393192

End: 1394700

Strand: Reverse

Name: ydgA [H]

Synonym: t1334

Alternate gene names: 29141791

Gene position: 1394700-1393192 (Counterclockwise)

Preceding gene: 29141792

Following gene: 29141790

Centisome position: 29.1

GC content: 52.49

Gene sequence:

>1509_bases
ATGAAAAAAACACTGGTAGCTGCAGGTGTAGTAATTGCACTTGGCATCGTCTGGACAGGCGGCGCCTGGTATACGGGGAA
AAAGCTGGAGAACCATCTTGCAGAAATGGTGACTCAGGCCAATGAACAGCTCAAGCGTACTGCGCCGGAGGCCGGTGTCG
AATTAAGTTATCAAAACTACCAGCGCGGCGTGTTCAGTAGCCATCTGCAACTGGTTGTCAAACCGGTTGCCGGCGCAGAC
AATACCTGGTTGAAGCCCGGGCAAAGCATTGTGCTGGACGAGTCCGTTTCACATGGCCCCTTCCCGCTCGCCCAGCTCAA
AACGCTCAATCTGATCCCTTCTATGGCGTCGGTAAAAACCACTCTGGTGAATAACGATGCGGCAAAACCCCTCTTTGATA
TTGCGAAAGGCGACGCGCCCTTTGTTATCAATACCCGCATTGGTTATGGCGGCGATACCCGCTCCGATATCTCTCTCAAG
CCGTTAAACTACGAGAATGCCGGTGAAAAGGTCGCCTTTAGCGGCGGCGAGTTCCAGCTTAACGCCGATAAAGACGGTAA
TGTGGTTTCGCTGTCGGGCGAAGCGCAGAGCGGCCTGGTCGATGCCGTTAACGAATATAATCAGAAGGTACAACTCACCT
TTAATAATTTGAAAACAGACGGTACCAGTAAGCTGGCAAGCTTTGGCGAGCGTGTAGGCGACCAAAAGTTAACGCTGGAT
AAACTGTCCATCGCCATTGAGGGTAAAGAGATGGCGGTGCTGGAAGGGATGGAAATTGCCGGCAAGTCCGATCTCGTCAA
CGACGGAAAAACCATTAACAGCCAGTTGGATTACTCGCTTAACAGCCTGAAAGTGCAGAATCAGGATTTGGGCAGCGGTA
AATTAACGCTGAAAGTCGGTCAAATCGACGGCGAAGCCTGGCACCAGTTTAGTCAGCAATATCATGCGCAAACGCAGGCG
CTGCTGAATCAGCCGGACGTGGCGCAGAATCCTGAGCTTTATCAGCAAAAAGTCACTGAAGCGTTCTTTAGCGCTCTCCC
CGTGCTGTTAAAAGGCGATCCGGTTCTGACCCTGGCGCCGCTTAGCTGGAAAAACGCCAAAGGGGAAACCACGCTGAATC
TGTCGCTGTTCCTCAAAGATCCGGCAACCACAACGGCACAACCGCAAACGCTGGCACAGGAAGTCGACCGCTCCGTGAAA
TCGCTGGATGCGAAACTGGCAATTCCGATGGACATGGCGGTCGAGTTTATGACGCAGATAGCAAAACTGGAAGGCTATCA
GCAGGATGATGCGGAAAAACTGGCAAAACAGCAGGTGCAGGGGCTGTCCGCAATGGGTCAGATGTTCCGACTGACAACGC
TGAAGGATAATACTATCGCCTCCAGTTTGCAGTACGCCAATGGCCAGATCACGCTCAACGGACAAAAAATGCCGTTGGAA
GACTTTGTCGGCCTATTTGGGATGCCGGCGCTTTCCGTTCCGGACGTTCCGGCGCTGCCTCAACAATAA

Upstream 100 bases:

>100_bases
ACGTACTGAATTTTTTAACAACTCTTGCTAAGCTTATAACAGACGTAAAACTCCTCCAGGCGGTTTAATCCGCCTGGTTT
CATTTTTATGGACAATTGAT

Downstream 100 bases:

>100_bases
TCGCCTTGCCGGGTGTCGCGACGCTGCACCCGGTCTGCGCCGAACGACGCGCAGCCTCTACTTTTGCGTTACCAGGCGAG
CGGCTATCGTTTGACTCCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 502; Mature: 502

Protein sequence:

>502_residues
MKKTLVAAGVVIALGIVWTGGAWYTGKKLENHLAEMVTQANEQLKRTAPEAGVELSYQNYQRGVFSSHLQLVVKPVAGAD
NTWLKPGQSIVLDESVSHGPFPLAQLKTLNLIPSMASVKTTLVNNDAAKPLFDIAKGDAPFVINTRIGYGGDTRSDISLK
PLNYENAGEKVAFSGGEFQLNADKDGNVVSLSGEAQSGLVDAVNEYNQKVQLTFNNLKTDGTSKLASFGERVGDQKLTLD
KLSIAIEGKEMAVLEGMEIAGKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYHAQTQA
LLNQPDVAQNPELYQQKVTEAFFSALPVLLKGDPVLTLAPLSWKNAKGETTLNLSLFLKDPATTTAQPQTLAQEVDRSVK
SLDAKLAIPMDMAVEFMTQIAKLEGYQQDDAEKLAKQQVQGLSAMGQMFRLTTLKDNTIASSLQYANGQITLNGQKMPLE
DFVGLFGMPALSVPDVPALPQQ

Sequences:

>Translated_502_residues
MKKTLVAAGVVIALGIVWTGGAWYTGKKLENHLAEMVTQANEQLKRTAPEAGVELSYQNYQRGVFSSHLQLVVKPVAGAD
NTWLKPGQSIVLDESVSHGPFPLAQLKTLNLIPSMASVKTTLVNNDAAKPLFDIAKGDAPFVINTRIGYGGDTRSDISLK
PLNYENAGEKVAFSGGEFQLNADKDGNVVSLSGEAQSGLVDAVNEYNQKVQLTFNNLKTDGTSKLASFGERVGDQKLTLD
KLSIAIEGKEMAVLEGMEIAGKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYHAQTQA
LLNQPDVAQNPELYQQKVTEAFFSALPVLLKGDPVLTLAPLSWKNAKGETTLNLSLFLKDPATTTAQPQTLAQEVDRSVK
SLDAKLAIPMDMAVEFMTQIAKLEGYQQDDAEKLAKQQVQGLSAMGQMFRLTTLKDNTIASSLQYANGQITLNGQKMPLE
DFVGLFGMPALSVPDVPALPQQ
>Mature_502_residues
MKKTLVAAGVVIALGIVWTGGAWYTGKKLENHLAEMVTQANEQLKRTAPEAGVELSYQNYQRGVFSSHLQLVVKPVAGAD
NTWLKPGQSIVLDESVSHGPFPLAQLKTLNLIPSMASVKTTLVNNDAAKPLFDIAKGDAPFVINTRIGYGGDTRSDISLK
PLNYENAGEKVAFSGGEFQLNADKDGNVVSLSGEAQSGLVDAVNEYNQKVQLTFNNLKTDGTSKLASFGERVGDQKLTLD
KLSIAIEGKEMAVLEGMEIAGKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYHAQTQA
LLNQPDVAQNPELYQQKVTEAFFSALPVLLKGDPVLTLAPLSWKNAKGETTLNLSLFLKDPATTTAQPQTLAQEVDRSVK
SLDAKLAIPMDMAVEFMTQIAKLEGYQQDDAEKLAKQQVQGLSAMGQMFRLTTLKDNTIASSLQYANGQITLNGQKMPLE
DFVGLFGMPALSVPDVPALPQQ

Specific function: Unknown

COG id: COG5339

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Periplasmic side. Note=Has been isolated in association with the inner membrane, suggesting it may be tethered to the membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yihF and H.influenzae HI_1236 [H]

Homologues:

Organism=Escherichia coli, GI1787900, Length=502, Percent_Identity=79.8804780876494, Blast_Score=854, Evalue=0.0,
Organism=Escherichia coli, GI87082339, Length=484, Percent_Identity=32.8512396694215, Blast_Score=259, Evalue=3e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010352 [H]

Pfam domain/function: PF06097 DUF945 [H]

EC number: NA

Molecular weight: Translated: 54254; Mature: 54254

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTLVAAGVVIALGIVWTGGAWYTGKKLENHLAEMVTQANEQLKRTAPEAGVELSYQNY
CCCHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHH
QRGVFSSHLQLVVKPVAGADNTWLKPGQSIVLDESVSHGPFPLAQLKTLNLIPSMASVKT
HHHHHHHHHHEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHH
TLVNNDAAKPLFDIAKGDAPFVINTRIGYGGDTRSDISLKPLNYENAGEKVAFSGGEFQL
EEECCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCEECCCCCCCCCCEEEECCCEEEE
NADKDGNVVSLSGEAQSGLVDAVNEYNQKVQLTFNNLKTDGTSKLASFGERVGDQKLTLD
ECCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEE
KLSIAIEGKEMAVLEGMEIAGKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVG
EEEEEECCCEEEEECCCCCCCCCCCCCCCCEECCHHCCCHHHEEEECCCCCCCEEEEEEE
QIDGEAWHQFSQQYHAQTQALLNQPDVAQNPELYQQKVTEAFFSALPVLLKGDPVLTLAP
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCEEEEEC
LSWKNAKGETTLNLSLFLKDPATTTAQPQTLAQEVDRSVKSLDAKLAIPMDMAVEFMTQI
CCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHH
AKLEGYQQDDAEKLAKQQVQGLSAMGQMFRLTTLKDNTIASSLQYANGQITLNGQKMPLE
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHEECCCEEEECCCCCCHH
DFVGLFGMPALSVPDVPALPQQ
HHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKTLVAAGVVIALGIVWTGGAWYTGKKLENHLAEMVTQANEQLKRTAPEAGVELSYQNY
CCCHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHH
QRGVFSSHLQLVVKPVAGADNTWLKPGQSIVLDESVSHGPFPLAQLKTLNLIPSMASVKT
HHHHHHHHHHEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHH
TLVNNDAAKPLFDIAKGDAPFVINTRIGYGGDTRSDISLKPLNYENAGEKVAFSGGEFQL
EEECCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCEECCCCCCCCCCEEEECCCEEEE
NADKDGNVVSLSGEAQSGLVDAVNEYNQKVQLTFNNLKTDGTSKLASFGERVGDQKLTLD
ECCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEE
KLSIAIEGKEMAVLEGMEIAGKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVG
EEEEEECCCEEEEECCCCCCCCCCCCCCCCEECCHHCCCHHHEEEECCCCCCCEEEEEEE
QIDGEAWHQFSQQYHAQTQALLNQPDVAQNPELYQQKVTEAFFSALPVLLKGDPVLTLAP
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCEEEEEC
LSWKNAKGETTLNLSLFLKDPATTTAQPQTLAQEVDRSVKSLDAKLAIPMDMAVEFMTQI
CCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHH
AKLEGYQQDDAEKLAKQQVQGLSAMGQMFRLTTLKDNTIASSLQYANGQITLNGQKMPLE
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHEECCCEEEECCCCCCHH
DFVGLFGMPALSVPDVPALPQQ
HHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]