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The map label for this gene is xylR [C]

Identifier: 28379747

GI number: 28379747

Start: 3030483

End: 3031220

Strand: Direct

Name: xylR [C]

Synonym: lp_3415

Alternate gene names: 28379747

Gene position: 3030483-3031220 (Clockwise)

Preceding gene: 28379743

Following gene: 28379750

Centisome position: 91.6

GC content: 34.28

Gene sequence:

>738_bases
TTGAATTTTCCAGAGCTCAAACTTTCTCAAACAGAACGCGATTTCAATTTTGATTTTGCTATATTGGAACATGATTTAAG
TTATTTTTTCGAAAAGCGTTGTCTTGACTACGCCTTGGAACATATCAATAGATTTAATCACAAAATCAAGGATAACTTAT
ACAACGTCCGCCCACTCATTCTAAAAGAAGCCTTAATTTCACTAACCTGTGATCTAGCAAGTGTCAGCTTTTATCATTAT
TTGAACATGATCACATTCGTTAACTTAAGAAAGGACATTTTGCATTACCTCACAACAACAACACTAACGAATGATGATTT
TATGCCACTTTTAGAGTCAATCGTTAACAATTATTTTAGCAATCTTGATACACTTGATATTCCAATTGATGGTACCCGCC
TCTCTAAGCAAGTCGCGCTAGTTGTCTATTATATTGATAATCATTGTGATGAGCCATTAAGAGCAAATACCATCTTAGAG
GAACTGACGTTAGATCCTGAATACACTAAGCGTAAATTTCGTAAAGAACTAGGGTTTACCATCAACTTCTACATTCGCCA
CGCTAAATTACAGCGGGCAAAGCAATTATTAATTAATACCCATCTTCCTATAGGTGAAATTGCAGAAAGAATCAACTTCT
ACAATAGCGCCGAATTTGCACGCCAGTTTCAAAAAGAATTCGATATTACTCCGAGTAAATATCGCGAGTTAAATCAAATT
TTTTATAAAGAAGAATAA

Upstream 100 bases:

>100_bases
TAAAGCATACCAATTAAAGTTAATCAAGTACACTATTATGTACGTTTACTATTTGTATAAAATTCACTATTTTTGTAACT
TATGGGGGAGGAACTGTCCA

Downstream 100 bases:

>100_bases
ATAGGATATTTACTTTGTACAATAAAATATTTTTTTGTGTTTTAAAATTCGCATATAAGTTTAATCACTCTTAAACTTGA
TATTAATTCTGCAATATCAA

Product: transcription regulator

Products: NA

Alternate protein names: Transcription Regulator; Two Component Transcriptional Regulator AraC Family; Two Component Transcriptional Regulator Arac Family; Two-Component System Response Regulator YesN; Two Component Transcriptional Regulator; Two-Component System Response Regulator; Response Regulator; AraC/XylS Family Transcriptional Regulator; AraC Family Transcription Regulator; AraC Family Transcriptional Regulator

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MNFPELKLSQTERDFNFDFAILEHDLSYFFEKRCLDYALEHINRFNHKIKDNLYNVRPLILKEALISLTCDLASVSFYHY
LNMITFVNLRKDILHYLTTTTLTNDDFMPLLESIVNNYFSNLDTLDIPIDGTRLSKQVALVVYYIDNHCDEPLRANTILE
ELTLDPEYTKRKFRKELGFTINFYIRHAKLQRAKQLLINTHLPIGEIAERINFYNSAEFARQFQKEFDITPSKYRELNQI
FYKEE

Sequences:

>Translated_245_residues
MNFPELKLSQTERDFNFDFAILEHDLSYFFEKRCLDYALEHINRFNHKIKDNLYNVRPLILKEALISLTCDLASVSFYHY
LNMITFVNLRKDILHYLTTTTLTNDDFMPLLESIVNNYFSNLDTLDIPIDGTRLSKQVALVVYYIDNHCDEPLRANTILE
ELTLDPEYTKRKFRKELGFTINFYIRHAKLQRAKQLLINTHLPIGEIAERINFYNSAEFARQFQKEFDITPSKYRELNQI
FYKEE
>Mature_245_residues
MNFPELKLSQTERDFNFDFAILEHDLSYFFEKRCLDYALEHINRFNHKIKDNLYNVRPLILKEALISLTCDLASVSFYHY
LNMITFVNLRKDILHYLTTTTLTNDDFMPLLESIVNNYFSNLDTLDIPIDGTRLSKQVALVVYYIDNHCDEPLRANTILE
ELTLDPEYTKRKFRKELGFTINFYIRHAKLQRAKQLLINTHLPIGEIAERINFYNSAEFARQFQKEFDITPSKYRELNQI
FYKEE

Specific function: Regulatory Protein For The Xylbafghr Operon. [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789993, Length=101, Percent_Identity=31.6831683168317, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29278; Mature: 29278

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFPELKLSQTERDFNFDFAILEHDLSYFFEKRCLDYALEHINRFNHKIKDNLYNVRPLI
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LKEALISLTCDLASVSFYHYLNMITFVNLRKDILHYLTTTTLTNDDFMPLLESIVNNYFS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
NLDTLDIPIDGTRLSKQVALVVYYIDNHCDEPLRANTILEELTLDPEYTKRKFRKELGFT
CCCCEECCCCCHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCE
INFYIRHAKLQRAKQLLINTHLPIGEIAERINFYNSAEFARQFQKEFDITPSKYRELNQI
EEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHH
FYKEE
HHCCC
>Mature Secondary Structure
MNFPELKLSQTERDFNFDFAILEHDLSYFFEKRCLDYALEHINRFNHKIKDNLYNVRPLI
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LKEALISLTCDLASVSFYHYLNMITFVNLRKDILHYLTTTTLTNDDFMPLLESIVNNYFS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
NLDTLDIPIDGTRLSKQVALVVYYIDNHCDEPLRANTILEELTLDPEYTKRKFRKELGFT
CCCCEECCCCCHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCE
INFYIRHAKLQRAKQLLINTHLPIGEIAERINFYNSAEFARQFQKEFDITPSKYRELNQI
EEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHH
FYKEE
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA