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The map label for this gene is intZ [C]

Identifier: 28379726

GI number: 28379726

Start: 3006114

End: 3007280

Strand: Direct

Name: intZ [C]

Synonym: lp_3390

Alternate gene names: 28379726

Gene position: 3006114-3007280 (Clockwise)

Preceding gene: 28379725

Following gene: 28379727

Centisome position: 90.87

GC content: 40.53

Gene sequence:

>1167_bases
ATGAAAGGAATAATCAATATGGCTACATTCAAGCAGTATAAAACTAAATCTGGTGCTTTCTGGGAGGCTTTTACATCCGT
GGGTAAAGATACCAACGGCAAAGCCAAACGGATGCACAAGCGTGGTTTTAAGACAAAAAAAGAAGCCCAATTATGGACTT
CCAATGTTCAGACAGATTTTACTAAGAATGGTTTCATAGCAAACGATAATATCACCTTTGCCGAACTCTATACTAAATGG
TTCAACGAGGATTACAAGGAACAAGTCAAAGAATCAACGTACATGATAACAGACGACATCTTTAGGTTGCATATTTTGCC
CGAATTAGGCTCTCAACGGGTGAAACGTATCACAGTAGCCCAATGTCAATCAATCGTGCATAAGTGGCTTAATCAGGGAT
TCAAAACGTACCGTCGGTTTAGGACGTACGCCATTAGTGTTTTTGATTTTGGTGTACGGATGGAATTAACCACCCGTAAC
CCAATGGCTAAAACTAGTATTCCTAAACAAAAAACAAAGCCACAAGCGCCACACGTTGATTTCTACGAAAAATCGGAGCT
ACTGCATTTTCTTGATTGTGCGTCAAAACACGAGAACCCCCAAGCATTTATGTTCTTTCGTCTGCTGGCCTTTACGGGCT
TACGGCGAGGCGAAGCATTAGCATTGCAATGGAGCGATATTAACTTTGAAACTAACGAACTAACGGTTAATAAAACCCAA
GCAGTAGGTAAACGTTGGCGTACGATCATACAGACACCAAAAACCAATACCAGTTATCGCACTATCGTACTTGACCCAGA
CACTGCACAATGGTTGCACAAGTGGAAGATGACCCAAGCCAGACAATGTTTTGAACTTGGATTCAACGCTAATGATCCTA
GTCAACTGGTATTTACTAACCAACAAAACAAGCTGATGTCACCTAGTACAGTTAACTATTTTAATTGGAGTATCTGTAAA
AAATACGGTTTGCGCCATATAAAGATTCATGCGTTCAGACATACATTCTGCACGCTAGCTTTTGAAGCTCATGCGGGAAT
TAACGAAGTGTCTAAGACGTTAGGCCACGCTGACCTTAAAATCACTGAACAAATTTATTTACACGTCACCAAAAAACAAA
AGAACGAGACTGCTTCGAAGCTGGCTCGTTATATGAGTGAATTATGA

Upstream 100 bases:

>100_bases
AATGGCAATAAACTAGACGCAAAAAAAAGAAAACTTTTAATTACATTTCTCAAAACACTCTTAAACTAATTAGCCTTTAC
ATACTTGCCCGCCAGCTGGT

Downstream 100 bases:

>100_bases
GAGTCTGATTTTGTGGTGCATTTTTGGTGCAATTGTGGTGCATTTTATTTGTGCCCTATTGTGTCTTATTACACTCAAAA
ATTAATAAAACGCTGCTATA

Product: prophage Lp4 protein 1, integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MKGIINMATFKQYKTKSGAFWEAFTSVGKDTNGKAKRMHKRGFKTKKEAQLWTSNVQTDFTKNGFIANDNITFAELYTKW
FNEDYKEQVKESTYMITDDIFRLHILPELGSQRVKRITVAQCQSIVHKWLNQGFKTYRRFRTYAISVFDFGVRMELTTRN
PMAKTSIPKQKTKPQAPHVDFYEKSELLHFLDCASKHENPQAFMFFRLLAFTGLRRGEALALQWSDINFETNELTVNKTQ
AVGKRWRTIIQTPKTNTSYRTIVLDPDTAQWLHKWKMTQARQCFELGFNANDPSQLVFTNQQNKLMSPSTVNYFNWSICK
KYGLRHIKIHAFRHTFCTLAFEAHAGINEVSKTLGHADLKITEQIYLHVTKKQKNETASKLARYMSEL

Sequences:

>Translated_388_residues
MKGIINMATFKQYKTKSGAFWEAFTSVGKDTNGKAKRMHKRGFKTKKEAQLWTSNVQTDFTKNGFIANDNITFAELYTKW
FNEDYKEQVKESTYMITDDIFRLHILPELGSQRVKRITVAQCQSIVHKWLNQGFKTYRRFRTYAISVFDFGVRMELTTRN
PMAKTSIPKQKTKPQAPHVDFYEKSELLHFLDCASKHENPQAFMFFRLLAFTGLRRGEALALQWSDINFETNELTVNKTQ
AVGKRWRTIIQTPKTNTSYRTIVLDPDTAQWLHKWKMTQARQCFELGFNANDPSQLVFTNQQNKLMSPSTVNYFNWSICK
KYGLRHIKIHAFRHTFCTLAFEAHAGINEVSKTLGHADLKITEQIYLHVTKKQKNETASKLARYMSEL
>Mature_388_residues
MKGIINMATFKQYKTKSGAFWEAFTSVGKDTNGKAKRMHKRGFKTKKEAQLWTSNVQTDFTKNGFIANDNITFAELYTKW
FNEDYKEQVKESTYMITDDIFRLHILPELGSQRVKRITVAQCQSIVHKWLNQGFKTYRRFRTYAISVFDFGVRMELTTRN
PMAKTSIPKQKTKPQAPHVDFYEKSELLHFLDCASKHENPQAFMFFRLLAFTGLRRGEALALQWSDINFETNELTVNKTQ
AVGKRWRTIIQTPKTNTSYRTIVLDPDTAQWLHKWKMTQARQCFELGFNANDPSQLVFTNQQNKLMSPSTVNYFNWSICK
KYGLRHIKIHAFRHTFCTLAFEAHAGINEVSKTLGHADLKITEQIYLHVTKKQKNETASKLARYMSEL

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45313; Mature: 45313

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGIINMATFKQYKTKSGAFWEAFTSVGKDTNGKAKRMHKRGFKTKKEAQLWTSNVQTDF
CCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCC
TKNGFIANDNITFAELYTKWFNEDYKEQVKESTYMITDDIFRLHILPELGSQRVKRITVA
CCCCEEECCCCHHHHHHHHHHCHHHHHHHHHCCEEEECCCEEEEECHHHHHHHHHHHHHH
QCQSIVHKWLNQGFKTYRRFRTYAISVFDFGVRMELTTRNPMAKTSIPKQKTKPQAPHVD
HHHHHHHHHHHHHHHHHHHHHHHEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
FYEKSELLHFLDCASKHENPQAFMFFRLLAFTGLRRGEALALQWSDINFETNELTVNKTQ
CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCEECCEEEECHHH
AVGKRWRTIIQTPKTNTSYRTIVLDPDTAQWLHKWKMTQARQCFELGFNANDPSQLVFTN
HHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC
QQNKLMSPSTVNYFNWSICKKYGLRHIKIHAFRHTFCTLAFEAHAGINEVSKTLGHADLK
CCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEHHHHHEEEEHHHCCHHHHHHHHCCCCEE
ITEQIYLHVTKKQKNETASKLARYMSEL
EEEEEEEEEEHHHCHHHHHHHHHHHHCC
>Mature Secondary Structure
MKGIINMATFKQYKTKSGAFWEAFTSVGKDTNGKAKRMHKRGFKTKKEAQLWTSNVQTDF
CCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCC
TKNGFIANDNITFAELYTKWFNEDYKEQVKESTYMITDDIFRLHILPELGSQRVKRITVA
CCCCEEECCCCHHHHHHHHHHCHHHHHHHHHCCEEEECCCEEEEECHHHHHHHHHHHHHH
QCQSIVHKWLNQGFKTYRRFRTYAISVFDFGVRMELTTRNPMAKTSIPKQKTKPQAPHVD
HHHHHHHHHHHHHHHHHHHHHHHEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
FYEKSELLHFLDCASKHENPQAFMFFRLLAFTGLRRGEALALQWSDINFETNELTVNKTQ
CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCEECCEEEECHHH
AVGKRWRTIIQTPKTNTSYRTIVLDPDTAQWLHKWKMTQARQCFELGFNANDPSQLVFTN
HHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC
QQNKLMSPSTVNYFNWSICKKYGLRHIKIHAFRHTFCTLAFEAHAGINEVSKTLGHADLK
CCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEHHHHHEEEEHHHCCHHHHHHHHCCCCEE
ITEQIYLHVTKKQKNETASKLARYMSEL
EEEEEEEEEEHHHCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]