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The map label for this gene is yqkD [H]

Identifier: 28379634

GI number: 28379634

Start: 2904444

End: 2905385

Strand: Direct

Name: yqkD [H]

Synonym: lp_3265

Alternate gene names: 28379634

Gene position: 2904444-2905385 (Clockwise)

Preceding gene: 28379633

Following gene: 28379636

Centisome position: 87.79

GC content: 47.24

Gene sequence:

>942_bases
ATGAAAAAAACACGCGCCGTAGCCGGAATTAGTGCTCCTGTGGCAATTTTTTCGGCCGCCCTATTCGCGAGTGAGAAGCT
CTACGATTTTGCTTTCAAGCGTGTTGATTACGTGCCCGAAACTTCGGCAGATAAACAAAAATACGCCGATGCCTACTACG
CTTATGTCGATTGGCTACACCGACAGCCCGTTCAACAGTGGCAACTGAACGCTAATGACGAGGCCAATCACCTTGTCGCA
CAGTACGTTCCTGCTAAAACAACCAGCAACCGAACCGTTATTGTTTCCCATGGCTACAAAGGTGATGGTGAAACGATGGC
AAATTACGCTTATATGTTCCATCAAATGGGCTATAACGTCCTCTTGCCCGACGATCGCGGCCATGGGCAAAGTGCCGGCA
AGTACATTAGCTTTGGGTGGCAGGATCGCCGCGACTATTTAGGCTGGATCGATAAAGTCGTCCGTATCAATGGTCGTCAC
ACGGATATCATCCTTTTTGGTGTCAGCATGGGTGGTGCGACCGTTGAAATGATGAGCGGCGAAGAGCTTCCATCACAAGT
TAAGGCCATCATTGCCGATTGTGGTTATTCGAGTATCGAGGAAGAACTCGCTTACTTATTAAAGCGACAGTTTCACTTAC
CAAAGTATCCGTTTGTGCCCATCGTTAGTTTTATTAACCGCCACCGTATGGGCTATTATTTAAGCGACGTCAGTTCTGTC
GAACAGCTCAAACATAACCATCTACCGATTTTCTTTATTCACGGTGATAAGGATGTCTACGTTCCAAGTTGGATGCTCAA
AGAAAATTATCAGGCCGCTAAGGGCCCCAAGCAGATGTGGCAGGTTCCCAACGCCACTCACGCCGAGAGTTTTTGGATCG
ATCCTGCCGAGTATCAACGACATGTTACAGCCTTTTTGAATCACTATGTTCCTGATAAATAA

Upstream 100 bases:

>100_bases
CGCCCGCCGCGATGGCCTTTTATATTACTAGAATAATATAGTTACATCTCACTTCTAATCGGCGTATCATATTATTGAGA
GATTAGAGGAGTGATATTTA

Downstream 100 bases:

>100_bases
AATTCAGTCGAAAAACCGTATGCGCTATTCACTGCACATACGGTTTTTTTGACCGCTTAAGTTGTTTTATGACTGGCTAA
TGATTCGGGCTAAGCGGTCC

Product: cell surface hydrolase, membrane-bound (putative)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MKKTRAVAGISAPVAIFSAALFASEKLYDFAFKRVDYVPETSADKQKYADAYYAYVDWLHRQPVQQWQLNANDEANHLVA
QYVPAKTTSNRTVIVSHGYKGDGETMANYAYMFHQMGYNVLLPDDRGHGQSAGKYISFGWQDRRDYLGWIDKVVRINGRH
TDIILFGVSMGGATVEMMSGEELPSQVKAIIADCGYSSIEEELAYLLKRQFHLPKYPFVPIVSFINRHRMGYYLSDVSSV
EQLKHNHLPIFFIHGDKDVYVPSWMLKENYQAAKGPKQMWQVPNATHAESFWIDPAEYQRHVTAFLNHYVPDK

Sequences:

>Translated_313_residues
MKKTRAVAGISAPVAIFSAALFASEKLYDFAFKRVDYVPETSADKQKYADAYYAYVDWLHRQPVQQWQLNANDEANHLVA
QYVPAKTTSNRTVIVSHGYKGDGETMANYAYMFHQMGYNVLLPDDRGHGQSAGKYISFGWQDRRDYLGWIDKVVRINGRH
TDIILFGVSMGGATVEMMSGEELPSQVKAIIADCGYSSIEEELAYLLKRQFHLPKYPFVPIVSFINRHRMGYYLSDVSSV
EQLKHNHLPIFFIHGDKDVYVPSWMLKENYQAAKGPKQMWQVPNATHAESFWIDPAEYQRHVTAFLNHYVPDK
>Mature_313_residues
MKKTRAVAGISAPVAIFSAALFASEKLYDFAFKRVDYVPETSADKQKYADAYYAYVDWLHRQPVQQWQLNANDEANHLVA
QYVPAKTTSNRTVIVSHGYKGDGETMANYAYMFHQMGYNVLLPDDRGHGQSAGKYISFGWQDRRDYLGWIDKVVRINGRH
TDIILFGVSMGGATVEMMSGEELPSQVKAIIADCGYSSIEEELAYLLKRQFHLPKYPFVPIVSFINRHRMGYYLSDVSSV
EQLKHNHLPIFFIHGDKDVYVPSWMLKENYQAAKGPKQMWQVPNATHAESFWIDPAEYQRHVTAFLNHYVPDK

Specific function: Unknown

COG id: COG1073

COG function: function code R; Hydrolases of the alpha/beta superfamily

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001375 [H]

Pfam domain/function: PF00326 Peptidase_S9 [H]

EC number: NA

Molecular weight: Translated: 35893; Mature: 35893

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTRAVAGISAPVAIFSAALFASEKLYDFAFKRVDYVPETSADKQKYADAYYAYVDWLH
CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
RQPVQQWQLNANDEANHLVAQYVPAKTTSNRTVIVSHGYKGDGETMANYAYMFHQMGYNV
HCCHHHHCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEE
LLPDDRGHGQSAGKYISFGWQDRRDYLGWIDKVVRINGRHTDIILFGVSMGGATVEMMSG
EECCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCEEEECCC
EELPSQVKAIIADCGYSSIEEELAYLLKRQFHLPKYPFVPIVSFINRHRMGYYLSDVSSV
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHH
EQLKHNHLPIFFIHGDKDVYVPSWMLKENYQAAKGPKQMWQVPNATHAESFWIDPAEYQR
HHHHHCCCCEEEEECCCCEECCHHHHHCCCCHHCCCHHHHCCCCCCCCCCCCCCHHHHHH
HVTAFLNHYVPDK
HHHHHHHHCCCCC
>Mature Secondary Structure
MKKTRAVAGISAPVAIFSAALFASEKLYDFAFKRVDYVPETSADKQKYADAYYAYVDWLH
CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
RQPVQQWQLNANDEANHLVAQYVPAKTTSNRTVIVSHGYKGDGETMANYAYMFHQMGYNV
HCCHHHHCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEE
LLPDDRGHGQSAGKYISFGWQDRRDYLGWIDKVVRINGRHTDIILFGVSMGGATVEMMSG
EECCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCEEEECCC
EELPSQVKAIIADCGYSSIEEELAYLLKRQFHLPKYPFVPIVSFINRHRMGYYLSDVSSV
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHH
EQLKHNHLPIFFIHGDKDVYVPSWMLKENYQAAKGPKQMWQVPNATHAESFWIDPAEYQR
HHHHHCCCCEEEEECCCCEECCHHHHHCCCCHHCCCHHHHCCCCCCCCCCCCCCHHHHHH
HVTAFLNHYVPDK
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]