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The map label for this gene is crtN [H]

Identifier: 28379632

GI number: 28379632

Start: 2901724

End: 2903220

Strand: Direct

Name: crtN [H]

Synonym: lp_3262

Alternate gene names: 28379632

Gene position: 2901724-2903220 (Clockwise)

Preceding gene: 28379631

Following gene: 28379633

Centisome position: 87.71

GC content: 41.35

Gene sequence:

>1497_bases
ATGAAGCAAGTATCGATTATTGGCGCTGGTATTGGTGGCTTAACCGCTGCAGTACGGCTTCAAAAATTAGGTTATAATGT
TACGATTTATGAGCAAAACGCGCAACCGGGTGGCAAAATGAACCAGATTGTTAGCCAAGGATTTACATTTGACGTGGGGC
CGACGATCGTCATGATGAAAGACATCTACGAAGAAGTCTTTCGCTTTTGCGGGGTCGATCCGCACAACTATTTACCATTC
GAAGAAGTTCAACCTTTGATGCACCTTGTCTTTGGTGATCAATCTAGTCTAGATTTGTCACGCGATCTCCCAACATTAAT
TGCCGAGATTAACCGCATTGCGCCTGATGACGTCAATGGTATGTTAAATTTTTTAGCGGATATTTATCACCGGTATACCA
TCGCGAAGCCTAATTTTTTAGAACGATCATTTCGTAACTGGCGTGACTTTTATAACCTACCCGCTCTGTATGCAGGACTA
CAGTTACGCACCTTTAACAATGCCTACAAAAACATTGCAAAATTTATCAAGAATGAAAATCTACGTAATTCATTAGCCTT
TCAGACACTGTATATTGGGATTTCTCCCTACCAGGGCCCGTCGCTATACAACATTATTCCGATGATTGAGCTCTTCTACG
GGGTCTATTTTTTAAAGGGTGGTATGTACACAGTTGTCAATAGTCTCGTTAAGTTATTCAAAGAACAGGGTGGTACGTTA
AAGCTTGCCACACCAGTTCAAGAAATTATCATCAAAGATAAAGTTGCTGTTGGCATTCGTGTCAATAATCATCCGATCCA
CAGTGACTATGTCCTATGTAATGCTGATTTTCCAACCGCCATGACAACACTGATTCCAAATGAGCAAGATCGTGGTCAGT
ACACAGATCAAAAAATTGCCAAAATGGATTATTCATGCTCATGTCTCGTCTTGTATTTAGGACTAGACAAAAAATACCCA
ACCGAAGCATTACACACGATCCACTTTGCACAAGATTTCAGCAAAAACGTCGCCGATCTATTTGACAACGGCAAGTTACC
AGAAGATCCCTCGTATTATGTCTATGTTCCATCAAAGATGGATCCAAGTTTAGCTCCCGAAAACAGTGAGGCACTCTATG
TTTTAGTACCAGTTCCTGAGCTCTCAAAGTTTAATGACTGGTCACCAACAACACTGAAGAACTATCGTCAACTAATCATT
AACAAACTAAGACAAACGGCTACCTTCAGCGATATTGAACAGCATATCGTTGTCGAAAAGCAGTTTACACCGGTTGACTT
CAAAGAACAGTTTGGCGCCTATAACGGAGCCACTTTCGGCTTACGACCGACGTTAAAACAAAGTAATTATTATCGTCCCC
ATAACAAGTTCGACTATGCCGACCATCTTTATTTTTGTGGTAGTAGCACCCACCCTGGGGCCGGTGTTCCCATTGTTATG
CAAAGTGCTAAATTAGCCGTTGAGGAGTTGATTAAAGATGACCAAACTAATGCCTAA

Upstream 100 bases:

>100_bases
GTAATCATATTTGTTGTACTTTTTACATTATTAAACCAAAATATAACTAATGATTAACCATGCTTTTTAGTTATTCATCT
GTTAAGGGGGAGATTTACTG

Downstream 100 bases:

>100_bases
ATTCGAACAACATCGCACTGACTTTGCGTACTGTCAAACAATTACTAAAAGGTCTTCTAGCGCATTCTACACCGCCTTCT
CGCAATTACCACTAGAACGC

Product: squalene synthase

Products: NA

Alternate protein names: 4,4'-diapophytoene desaturase; Diapophytoene desaturase [H]

Number of amino acids: Translated: 498; Mature: 498

Protein sequence:

>498_residues
MKQVSIIGAGIGGLTAAVRLQKLGYNVTIYEQNAQPGGKMNQIVSQGFTFDVGPTIVMMKDIYEEVFRFCGVDPHNYLPF
EEVQPLMHLVFGDQSSLDLSRDLPTLIAEINRIAPDDVNGMLNFLADIYHRYTIAKPNFLERSFRNWRDFYNLPALYAGL
QLRTFNNAYKNIAKFIKNENLRNSLAFQTLYIGISPYQGPSLYNIIPMIELFYGVYFLKGGMYTVVNSLVKLFKEQGGTL
KLATPVQEIIIKDKVAVGIRVNNHPIHSDYVLCNADFPTAMTTLIPNEQDRGQYTDQKIAKMDYSCSCLVLYLGLDKKYP
TEALHTIHFAQDFSKNVADLFDNGKLPEDPSYYVYVPSKMDPSLAPENSEALYVLVPVPELSKFNDWSPTTLKNYRQLII
NKLRQTATFSDIEQHIVVEKQFTPVDFKEQFGAYNGATFGLRPTLKQSNYYRPHNKFDYADHLYFCGSSTHPGAGVPIVM
QSAKLAVEELIKDDQTNA

Sequences:

>Translated_498_residues
MKQVSIIGAGIGGLTAAVRLQKLGYNVTIYEQNAQPGGKMNQIVSQGFTFDVGPTIVMMKDIYEEVFRFCGVDPHNYLPF
EEVQPLMHLVFGDQSSLDLSRDLPTLIAEINRIAPDDVNGMLNFLADIYHRYTIAKPNFLERSFRNWRDFYNLPALYAGL
QLRTFNNAYKNIAKFIKNENLRNSLAFQTLYIGISPYQGPSLYNIIPMIELFYGVYFLKGGMYTVVNSLVKLFKEQGGTL
KLATPVQEIIIKDKVAVGIRVNNHPIHSDYVLCNADFPTAMTTLIPNEQDRGQYTDQKIAKMDYSCSCLVLYLGLDKKYP
TEALHTIHFAQDFSKNVADLFDNGKLPEDPSYYVYVPSKMDPSLAPENSEALYVLVPVPELSKFNDWSPTTLKNYRQLII
NKLRQTATFSDIEQHIVVEKQFTPVDFKEQFGAYNGATFGLRPTLKQSNYYRPHNKFDYADHLYFCGSSTHPGAGVPIVM
QSAKLAVEELIKDDQTNA
>Mature_498_residues
MKQVSIIGAGIGGLTAAVRLQKLGYNVTIYEQNAQPGGKMNQIVSQGFTFDVGPTIVMMKDIYEEVFRFCGVDPHNYLPF
EEVQPLMHLVFGDQSSLDLSRDLPTLIAEINRIAPDDVNGMLNFLADIYHRYTIAKPNFLERSFRNWRDFYNLPALYAGL
QLRTFNNAYKNIAKFIKNENLRNSLAFQTLYIGISPYQGPSLYNIIPMIELFYGVYFLKGGMYTVVNSLVKLFKEQGGTL
KLATPVQEIIIKDKVAVGIRVNNHPIHSDYVLCNADFPTAMTTLIPNEQDRGQYTDQKIAKMDYSCSCLVLYLGLDKKYP
TEALHTIHFAQDFSKNVADLFDNGKLPEDPSYYVYVPSKMDPSLAPENSEALYVLVPVPELSKFNDWSPTTLKNYRQLII
NKLRQTATFSDIEQHIVVEKQFTPVDFKEQFGAYNGATFGLRPTLKQSNYYRPHNKFDYADHLYFCGSSTHPGAGVPIVM
QSAKLAVEELIKDDQTNA

Specific function: Catalyzes three successive dehydrogenation reactions that lead to the introduction of three double bonds into dehydrosqualene (4,4'-diapophytoene), with 4,4'-diapophytofluene and 4,4'-diapo-zeta-carotene as intermediates, and 4,4'- diaponeurosporene (the

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family. CrtN subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR014105 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 56454; Mature: 56454

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQVSIIGAGIGGLTAAVRLQKLGYNVTIYEQNAQPGGKMNQIVSQGFTFDVGPTIVMMK
CCCEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHCCCEECCCCHHHHHH
DIYEEVFRFCGVDPHNYLPFEEVQPLMHLVFGDQSSLDLSRDLPTLIAEINRIAPDDVNG
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHH
MLNFLADIYHRYTIAKPNFLERSFRNWRDFYNLPALYAGLQLRTFNNAYKNIAKFIKNEN
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHCCEEEEHHHHHHHHHHHHHCCC
LRNSLAFQTLYIGISPYQGPSLYNIIPMIELFYGVYFLKGGMYTVVNSLVKLFKEQGGTL
HHHHHEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEE
KLATPVQEIIIKDKVAVGIRVNNHPIHSDYVLCNADFPTAMTTLIPNEQDRGQYTDQKIA
EECCHHHHHHHHCCEEEEEEECCCCCCCCEEEECCCCCHHHHHHCCCCCCCCCCHHHHHH
KMDYSCSCLVLYLGLDKKYPTEALHTIHFAQDFSKNVADLFDNGKLPEDPSYYVYVPSKM
HCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCC
DPSLAPENSEALYVLVPVPELSKFNDWSPTTLKNYRQLIINKLRQTATFSDIEQHIVVEK
CCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC
QFTPVDFKEQFGAYNGATFGLRPTLKQSNYYRPHNKFDYADHLYFCGSSTHPGAGVPIVM
CCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEE
QSAKLAVEELIKDDQTNA
HHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKQVSIIGAGIGGLTAAVRLQKLGYNVTIYEQNAQPGGKMNQIVSQGFTFDVGPTIVMMK
CCCEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHCCCEECCCCHHHHHH
DIYEEVFRFCGVDPHNYLPFEEVQPLMHLVFGDQSSLDLSRDLPTLIAEINRIAPDDVNG
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHH
MLNFLADIYHRYTIAKPNFLERSFRNWRDFYNLPALYAGLQLRTFNNAYKNIAKFIKNEN
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHCCEEEEHHHHHHHHHHHHHCCC
LRNSLAFQTLYIGISPYQGPSLYNIIPMIELFYGVYFLKGGMYTVVNSLVKLFKEQGGTL
HHHHHEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEE
KLATPVQEIIIKDKVAVGIRVNNHPIHSDYVLCNADFPTAMTTLIPNEQDRGQYTDQKIA
EECCHHHHHHHHCCEEEEEEECCCCCCCCEEEECCCCCHHHHHHCCCCCCCCCCHHHHHH
KMDYSCSCLVLYLGLDKKYPTEALHTIHFAQDFSKNVADLFDNGKLPEDPSYYVYVPSKM
HCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCC
DPSLAPENSEALYVLVPVPELSKFNDWSPTTLKNYRQLIINKLRQTATFSDIEQHIVVEK
CCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC
QFTPVDFKEQFGAYNGATFGLRPTLKQSNYYRPHNKFDYADHLYFCGSSTHPGAGVPIVM
CCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEE
QSAKLAVEELIKDDQTNA
HHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA