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The map label for this gene is sorC [H]

Identifier: 28379126

GI number: 28379126

Start: 2318942

End: 2319892

Strand: Direct

Name: sorC [H]

Synonym: lp_2599

Alternate gene names: 28379126

Gene position: 2318942-2319892 (Clockwise)

Preceding gene: 28379125

Following gene: 28379127

Centisome position: 70.1

GC content: 44.16

Gene sequence:

>951_bases
ATGAGTCATAATCGCCGACAATTACTGGCCAAGGTCGCTTATCTATATTATGAGCGTGACCATACTCAAGCCCAGATTGC
GAAAGAGCTAAACATTTATCGCACTACCATTAGCCGCATGTTAAAACAAGCTCGTCAATTAGGCATTGTCGAGATTAAAA
TCAATGATTTTAATTCTGATTTATTTGCCTTAGAAGAACAACTCAAGCAACGCTACCACTTGAAGAAAGCTGTTGTCATC
GCTGGCGAGCCACACGCTAATCATCAGCGTAAAGAACAGCTACTATCAACAGAAGCTGCGCTCTACCTCAAACAAATCAT
CAAACCAAATAACATTGTCGGTTTTGCTTGGGGGTCAATTCTCAGTGGTATGATTGGACAATTGCAGCACCCTATTCAAA
CTGATGCTACTTTTGTACCACTAGTCGGTGGTCCTAGCCCATCGAATGCAGCATACCACGTTAATGGTATCGTCTACGAT
GCAGCACGTACCTTTGGTGGTCACAGTTTATTTGTAGATGCTGCTGCAGTTCAAGAATCCAAATACATTCGCGATGGTAT
CTTGACATCCAATTACTTCCGCCAAATTCGTGATTGTTGGAACCACCTAGATATTGCACTACTCGGTATTGGGGGGCCAC
TCTCCAATACCAGTAGCCGTTGGCGCGATCTGTTAACCGATACTGACCGTGAACTTTTAAAGGAACGACAAGCAATTGGT
GATTGTTGTTGTACCTTTTTTGATAAGCATGGCAAAATTCTGACTGGTGACCTGCTTGATCGCACAATCGCGATTCCGCT
ACCACAATTAGCACACGTCCCTAATTCAATCGGAATTGCTCGTTCACTAACCAAAGCCCCCGCCATCTTAGCGCTCTTAA
AAATGGGGGTCCTAAACACACTAGTTACGGATGCCGAGACTGCACAAAGAGTGCTGGATTTGGACGATTAG

Upstream 100 bases:

>100_bases
AACCCGATTTAATCATAGTCCATGACAGGTTTAACTAGCAGAATACGTATTAAGTATAATTATTGGATTTGTTCGTCACT
CTTAGAAAGAAGTCTTCCAA

Downstream 100 bases:

>100_bases
CACATTTGTGCATTTTCCAATCATAAAAAGATGCTCATCCCTGTTATAACGGGATTCCAGCGATTATTACTCTGCAGATT
ATTGGTATCGCTTCCATAAC

Product: transcription regulator

Products: NA

Alternate protein names: Sor operon activator [H]

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MSHNRRQLLAKVAYLYYERDHTQAQIAKELNIYRTTISRMLKQARQLGIVEIKINDFNSDLFALEEQLKQRYHLKKAVVI
AGEPHANHQRKEQLLSTEAALYLKQIIKPNNIVGFAWGSILSGMIGQLQHPIQTDATFVPLVGGPSPSNAAYHVNGIVYD
AARTFGGHSLFVDAAAVQESKYIRDGILTSNYFRQIRDCWNHLDIALLGIGGPLSNTSSRWRDLLTDTDRELLKERQAIG
DCCCTFFDKHGKILTGDLLDRTIAIPLPQLAHVPNSIGIARSLTKAPAILALLKMGVLNTLVTDAETAQRVLDLDD

Sequences:

>Translated_316_residues
MSHNRRQLLAKVAYLYYERDHTQAQIAKELNIYRTTISRMLKQARQLGIVEIKINDFNSDLFALEEQLKQRYHLKKAVVI
AGEPHANHQRKEQLLSTEAALYLKQIIKPNNIVGFAWGSILSGMIGQLQHPIQTDATFVPLVGGPSPSNAAYHVNGIVYD
AARTFGGHSLFVDAAAVQESKYIRDGILTSNYFRQIRDCWNHLDIALLGIGGPLSNTSSRWRDLLTDTDRELLKERQAIG
DCCCTFFDKHGKILTGDLLDRTIAIPLPQLAHVPNSIGIARSLTKAPAILALLKMGVLNTLVTDAETAQRVLDLDD
>Mature_315_residues
SHNRRQLLAKVAYLYYERDHTQAQIAKELNIYRTTISRMLKQARQLGIVEIKINDFNSDLFALEEQLKQRYHLKKAVVIA
GEPHANHQRKEQLLSTEAALYLKQIIKPNNIVGFAWGSILSGMIGQLQHPIQTDATFVPLVGGPSPSNAAYHVNGIVYDA
ARTFGGHSLFVDAAAVQESKYIRDGILTSNYFRQIRDCWNHLDIALLGIGGPLSNTSSRWRDLLTDTDRELLKERQAIGD
CCCTFFDKHGKILTGDLLDRTIAIPLPQLAHVPNSIGIARSLTKAPAILALLKMGVLNTLVTDAETAQRVLDLDD

Specific function: Positively regulates, in the presence of L-sorbose, and negatively regulates, in the absence of L-sorbose, the transcription of the sor operon [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=315, Percent_Identity=26.3492063492064, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI87082414, Length=315, Percent_Identity=24.1269841269841, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 35263; Mature: 35132

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHNRRQLLAKVAYLYYERDHTQAQIAKELNIYRTTISRMLKQARQLGIVEIKINDFNSD
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCH
LFALEEQLKQRYHLKKAVVIAGEPHANHQRKEQLLSTEAALYLKQIIKPNNIVGFAWGSI
HHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHH
LSGMIGQLQHPIQTDATFVPLVGGPSPSNAAYHVNGIVYDAARTFGGHSLFVDAAAVQES
HHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEECEEEEEHHHHCCCCEEEEEHHHHHHH
KYIRDGILTSNYFRQIRDCWNHLDIALLGIGGPLSNTSSRWRDLLTDTDRELLKERQAIG
HHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
DCCCTFFDKHGKILTGDLLDRTIAIPLPQLAHVPNSIGIARSLTKAPAILALLKMGVLNT
HHHHHHHHCCCCEEEHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LVTDAETAQRVLDLDD
HHHCHHHHHHHHCCCC
>Mature Secondary Structure 
SHNRRQLLAKVAYLYYERDHTQAQIAKELNIYRTTISRMLKQARQLGIVEIKINDFNSD
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCH
LFALEEQLKQRYHLKKAVVIAGEPHANHQRKEQLLSTEAALYLKQIIKPNNIVGFAWGSI
HHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHH
LSGMIGQLQHPIQTDATFVPLVGGPSPSNAAYHVNGIVYDAARTFGGHSLFVDAAAVQES
HHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEECEEEEEHHHHCCCCEEEEEHHHHHHH
KYIRDGILTSNYFRQIRDCWNHLDIALLGIGGPLSNTSSRWRDLLTDTDRELLKERQAIG
HHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
DCCCTFFDKHGKILTGDLLDRTIAIPLPQLAHVPNSIGIARSLTKAPAILALLKMGVLNT
HHHHHHHHCCCCEEEHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LVTDAETAQRVLDLDD
HHHCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7947968 [H]