Definition Lactobacillus plantarum WCFS1, complete genome.
Accession NC_004567
Length 3,308,274

Click here to switch to the map view.

The map label for this gene is 28378288

Identifier: 28378288

GI number: 28378288

Start: 1446929

End: 1447468

Strand: Direct

Name: 28378288

Synonym: lp_1585

Alternate gene names: NA

Gene position: 1446929-1447468 (Clockwise)

Preceding gene: 28378287

Following gene: 28378291

Centisome position: 43.74

GC content: 45.19

Gene sequence:

>540_bases
ATGTTAGAACTAACAACGTTATTACAACAGTCGATTCGTTTAGACCGCGATATTACGGCCCGTCAACAGATTCATTGGCG
GCCACAAGAACGGTTGCAAAATGCGATGGTCTCACTGGACGTCGAATTGGCAGAAATGGCTAATACGTCGGAATGGTTCA
AAGTTTGGAAGATTCATCGTGGCAAAGCGGATCCTGATAAGACACACCGCGAAACGCTGCTGAACGAATACGTAGATGCG
ATGGACTTCTTCTTCCTTGTCTCAGCGATTCAACAGTGGACGCATTTGATTCCAGTAACGCCTGAGCAATTGACTACGAT
TGCGGCTAAGCCGGCGACTGATTTGAATAAACAGTACTTGGCGATCAAGCACCTCCTCTATGATGCTTACTTTAACCATC
GTCAGGAGAGCTACCAGCACGCTTGGCACGTTTTCTTGAAGATTGGGCTAGTTGATTTTGGTTTTACTCAGGACGAGATA
CAAACGGCGTTTACGGCCAAAAATCATGTCAATGAGCAAAGACAAGCAAATAACTATTAA

Upstream 100 bases:

>100_bases
TTACACTTTGGGTTCATGCGTGATTGGTACTTAGAAAATATCGATTCGCTAGAAATAAAAGCGGATCCATTAGTATTTGC
TTAAGTAACGGGGGTATTAG

Downstream 100 bases:

>100_bases
AAAAATAACCTAATTGCGCGATTTGATCACGTAACTAGGTTATTTTTTTAAGCCTCTGTCATTAATTGCGCGTCGTTATC
GGCGTCTTGTGCAACTAAGT

Product: hypothetical protein

Products: NA

Alternate protein names: Cytoplasmic Protein

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MLELTTLLQQSIRLDRDITARQQIHWRPQERLQNAMVSLDVELAEMANTSEWFKVWKIHRGKADPDKTHRETLLNEYVDA
MDFFFLVSAIQQWTHLIPVTPEQLTTIAAKPATDLNKQYLAIKHLLYDAYFNHRQESYQHAWHVFLKIGLVDFGFTQDEI
QTAFTAKNHVNEQRQANNY

Sequences:

>Translated_179_residues
MLELTTLLQQSIRLDRDITARQQIHWRPQERLQNAMVSLDVELAEMANTSEWFKVWKIHRGKADPDKTHRETLLNEYVDA
MDFFFLVSAIQQWTHLIPVTPEQLTTIAAKPATDLNKQYLAIKHLLYDAYFNHRQESYQHAWHVFLKIGLVDFGFTQDEI
QTAFTAKNHVNEQRQANNY
>Mature_179_residues
MLELTTLLQQSIRLDRDITARQQIHWRPQERLQNAMVSLDVELAEMANTSEWFKVWKIHRGKADPDKTHRETLLNEYVDA
MDFFFLVSAIQQWTHLIPVTPEQLTTIAAKPATDLNKQYLAIKHLLYDAYFNHRQESYQHAWHVFLKIGLVDFGFTQDEI
QTAFTAKNHVNEQRQANNY

Specific function: Unknown

COG id: COG4508

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21153; Mature: 21153

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELTTLLQQSIRLDRDITARQQIHWRPQERLQNAMVSLDVELAEMANTSEWFKVWKIHR
CCHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
GKADPDKTHRETLLNEYVDAMDFFFLVSAIQQWTHLIPVTPEQLTTIAAKPATDLNKQYL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
AIKHLLYDAYFNHRQESYQHAWHVFLKIGLVDFGFTQDEIQTAFTAKNHVNEQRQANNY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLELTTLLQQSIRLDRDITARQQIHWRPQERLQNAMVSLDVELAEMANTSEWFKVWKIHR
CCHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
GKADPDKTHRETLLNEYVDAMDFFFLVSAIQQWTHLIPVTPEQLTTIAAKPATDLNKQYL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
AIKHLLYDAYFNHRQESYQHAWHVFLKIGLVDFGFTQDEIQTAFTAKNHVNEQRQANNY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA