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The map label for this gene is racD

Identifier: 28378236

GI number: 28378236

Start: 1393473

End: 1394219

Strand: Direct

Name: racD

Synonym: lp_1523

Alternate gene names: NA

Gene position: 1393473-1394219 (Clockwise)

Preceding gene: 28378235

Following gene: 28378239

Centisome position: 42.12

GC content: 46.05

Gene sequence:

>747_bases
ATGAAAAATTGCTTTGGAATCATTGGTGGGATGGGAACAATGGCGACGGAGGACTTTGTGCATACCGTGAACCGGCTGAC
CGTTACCCATCGTGACCAGGATTATTTAAACTACGTCATTTTAAATGATGCTGAGATACCAGATCGCACCGCATATATTT
TGGATCATAACTGTGCCAACCCGTTACCATCATTGGAAGCGGATGTGCAGCTACTTAATCAATTAGGGGTCATGTTTATT
GTGATGACGTGTAACACAGCACATTACTTCATTCCCGCATTGACGGCGCTTTCTAACGTGCCAATTTTGAATATGCCGGC
CTTAGCGGTAACAGCAGCCTGTCGATCACAGCAACCGCGACCGTTACGAATCGGTATTTTAGCGACAACGGGAACACTAG
AGTCGCAACTTTATCAACAACTTATTCGGTCTAATGGACATATTCCTGTGATACCCAATAAGCAGCAGCAAGCTCAAGTG
ATGACCTTAATTTATGACGACATCAAGCAACGTGATTTTGTAGATCGGGTCAAATTTCATGGCTTAATTGATCAATTATT
GAATGCTGCTGATTGTGACGCCGTCATTCTCGGCTGCACCGAATTGTCGGTGGCTCAGGATGCTGCGCCATATGATTCTG
AACGAATTATTGACGCACAGTATGAACTAGCTCGAGCAACCGTCCAACGCGCACAGGCAACTAAGCCAGCGTTGATACTT
CGTCGGCGGCCATCGATTAGGCGGTAG

Upstream 100 bases:

>100_bases
GGATTAGTTGCTTGTTAGGAGGTGCATGTTAGATAATTATTAACAACTTAATGAAGTGCAGCATGGCCGTGAATCTCGTT
CGCTAAATGGGGGTGCCATT

Downstream 100 bases:

>100_bases
GAGGGTGCAGGTAACTGGATAAAAATGATTTTTGATCTATTTAGTACGTGTGATTGTAGCTGTTATAACACCACTTTCGT
ATACATGAAGAATAGTAAAA

Product: aspartate racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MKNCFGIIGGMGTMATEDFVHTVNRLTVTHRDQDYLNYVILNDAEIPDRTAYILDHNCANPLPSLEADVQLLNQLGVMFI
VMTCNTAHYFIPALTALSNVPILNMPALAVTAACRSQQPRPLRIGILATTGTLESQLYQQLIRSNGHIPVIPNKQQQAQV
MTLIYDDIKQRDFVDRVKFHGLIDQLLNAADCDAVILGCTELSVAQDAAPYDSERIIDAQYELARATVQRAQATKPALIL
RRRPSIRR

Sequences:

>Translated_248_residues
MKNCFGIIGGMGTMATEDFVHTVNRLTVTHRDQDYLNYVILNDAEIPDRTAYILDHNCANPLPSLEADVQLLNQLGVMFI
VMTCNTAHYFIPALTALSNVPILNMPALAVTAACRSQQPRPLRIGILATTGTLESQLYQQLIRSNGHIPVIPNKQQQAQV
MTLIYDDIKQRDFVDRVKFHGLIDQLLNAADCDAVILGCTELSVAQDAAPYDSERIIDAQYELARATVQRAQATKPALIL
RRRPSIRR
>Mature_248_residues
MKNCFGIIGGMGTMATEDFVHTVNRLTVTHRDQDYLNYVILNDAEIPDRTAYILDHNCANPLPSLEADVQLLNQLGVMFI
VMTCNTAHYFIPALTALSNVPILNMPALAVTAACRSQQPRPLRIGILATTGTLESQLYQQLIRSNGHIPVIPNKQQQAQV
MTLIYDDIKQRDFVDRVKFHGLIDQLLNAADCDAVILGCTELSVAQDAAPYDSERIIDAQYELARATVQRAQATKPALIL
RRRPSIRR

Specific function: Unknown

COG id: COG1794

COG function: function code M; Aspartate racemase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aspartate/glutamate racemases family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015942
- InterPro:   IPR001920
- InterPro:   IPR018187
- InterPro:   IPR004380 [H]

Pfam domain/function: PF01177 Asp_Glu_race [H]

EC number: =5.1.1.13 [H]

Molecular weight: Translated: 27627; Mature: 27627

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: PS00923 ASP_GLU_RACEMASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNCFGIIGGMGTMATEDFVHTVNRLTVTHRDQDYLNYVILNDAEIPDRTAYILDHNCAN
CCCHHHHHCCCCHHHHHHHHHHHHHHEEEECCCCCEEEEEEECCCCCCCEEEEEECCCCC
PLPSLEADVQLLNQLGVMFIVMTCNTAHYFIPALTALSNVPILNMPALAVTAACRSQQPR
CCCCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC
PLRIGILATTGTLESQLYQQLIRSNGHIPVIPNKQQQAQVMTLIYDDIKQRDFVDRVKFH
CEEEEEEEECCHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GLIDQLLNAADCDAVILGCTELSVAQDAAPYDSERIIDAQYELARATVQRAQATKPALIL
HHHHHHCCCCCCCEEEEECCHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCHHEE
RRRPSIRR
ECCCCCCC
>Mature Secondary Structure
MKNCFGIIGGMGTMATEDFVHTVNRLTVTHRDQDYLNYVILNDAEIPDRTAYILDHNCAN
CCCHHHHHCCCCHHHHHHHHHHHHHHEEEECCCCCEEEEEEECCCCCCCEEEEEECCCCC
PLPSLEADVQLLNQLGVMFIVMTCNTAHYFIPALTALSNVPILNMPALAVTAACRSQQPR
CCCCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC
PLRIGILATTGTLESQLYQQLIRSNGHIPVIPNKQQQAQVMTLIYDDIKQRDFVDRVKFH
CEEEEEEEECCHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GLIDQLLNAADCDAVILGCTELSVAQDAAPYDSERIIDAQYELARATVQRAQATKPALIL
HHHHHHCCCCCCCEEEEECCHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCHHEE
RRRPSIRR
ECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2054383; 1907199 [H]