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The map label for this gene is ydeP [H]

Identifier: 28378235

GI number: 28378235

Start: 1392750

End: 1393097

Strand: Direct

Name: ydeP [H]

Synonym: lp_1522

Alternate gene names: 28378235

Gene position: 1392750-1393097 (Clockwise)

Preceding gene: 28378232

Following gene: 28378236

Centisome position: 42.1

GC content: 48.56

Gene sequence:

>348_bases
ATGCAGCGACAAGTATACGATTGTACGCCGGGTTGTCCGGTTGAAAGTACCTTGCAAGTTATTGCCGGCAAGTGGAAGAG
CGTGATTTTGTATCATTTATTTACGGCAGGAACATGCCGGTTCAGCATTTTGCAAAAACGACTGCCGGGTTGTTCGCGGC
GGATGCTAGCTCGCCAGTTACAAGAATTGGTTCAAGACGGGGTGATTGCAAAACGAGTTTATCCGGTCGTGCCACCGAAA
ACGGAGTATTGGATCACGCCATTTGGTCAGACCTTGAAACCGGTGATTATGGCTATGGAGACGTGGGGCCGACAGTATAA
TTCAGTGAATGGAAAACCTCGTCAATAG

Upstream 100 bases:

>100_bases
TTATTTGCCACATAGGGACATATTTGTCACGCCTATTAGTCCGGTCTGACGGCAAAGTTGTGCTACAATCAAGACACTTA
ATTAAGGTAGGGGAAGTTAG

Downstream 100 bases:

>100_bases
GAATGTGAGAACGGGCATAGTGTGAGTTTCAAGGAATTGTTGCCGGTTTTGTTAGGGGCGATTGTGCTTGGTGCCTTGCT
CGCATTAATAGTGACTGTTT

Product: transcription regulator (putative)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MQRQVYDCTPGCPVESTLQVIAGKWKSVILYHLFTAGTCRFSILQKRLPGCSRRMLARQLQELVQDGVIAKRVYPVVPPK
TEYWITPFGQTLKPVIMAMETWGRQYNSVNGKPRQ

Sequences:

>Translated_115_residues
MQRQVYDCTPGCPVESTLQVIAGKWKSVILYHLFTAGTCRFSILQKRLPGCSRRMLARQLQELVQDGVIAKRVYPVVPPK
TEYWITPFGQTLKPVIMAMETWGRQYNSVNGKPRQ
>Mature_115_residues
MQRQVYDCTPGCPVESTLQVIAGKWKSVILYHLFTAGTCRFSILQKRLPGCSRRMLARQLQELVQDGVIAKRVYPVVPPK
TEYWITPFGQTLKPVIMAMETWGRQYNSVNGKPRQ

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=91, Percent_Identity=40.6593406593407, Blast_Score=78, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 13186; Mature: 13186

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRQVYDCTPGCPVESTLQVIAGKWKSVILYHLFTAGTCRFSILQKRLPGCSRRMLARQL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHH
QELVQDGVIAKRVYPVVPPKTEYWITPFGQTLKPVIMAMETWGRQYNSVNGKPRQ
HHHHHCCHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MQRQVYDCTPGCPVESTLQVIAGKWKSVILYHLFTAGTCRFSILQKRLPGCSRRMLARQL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHH
QELVQDGVIAKRVYPVVPPKTEYWITPFGQTLKPVIMAMETWGRQYNSVNGKPRQ
HHHHHCCHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]