| Definition | Lactobacillus plantarum WCFS1, complete genome. |
|---|---|
| Accession | NC_004567 |
| Length | 3,308,274 |
Click here to switch to the map view.
The map label for this gene is 28378217
Identifier: 28378217
GI number: 28378217
Start: 1374837
End: 1375856
Strand: Direct
Name: 28378217
Synonym: lp_1502
Alternate gene names: NA
Gene position: 1374837-1375856 (Clockwise)
Preceding gene: 28378216
Following gene: 28378218
Centisome position: 41.56
GC content: 48.04
Gene sequence:
>1020_bases GTGGTGGGGTGCTATGCTGAATTTAATGAAGTGAATGGTGAAAGGAGTTTCGTCATGGCTAAGTTTAACTTTACGCTGAA CGCTGCGCGGATGGACGCGAGTGGGCACTATGATTTTCAAAATGTGTTTGAATTTCCGGATTTTGTTGAAATGCGGCCAA CTTTGCGAGCAGCGGTACGCACGGTGGCTCGGGAGGCTTTTGATCAGCCCGTATTGCCGGTGAAGGTGGAACGGATGACG ACATCGCTGGAGGAACAATTAGAGCGTGAGACGCGCAAATATGAGCGGCAAGTCGGTGTTTATGACAATCAAAAGAGTGA ACGCAATCAGCTGGTACGGTTATTCACGCAGGTCTTACAGGTCATCAGCCGAACTGACGAAATCACTGAAGAACTTGAAG ACATTATCTATGCCGTCAATCAAACTCGTCTGAGCTTGATTGGGTTGCCAGCACTTGAAGGTACTGGCGAACTATACGAT GCCGACCGCGATCGTGAACTGATTGTGGGGACGTACTATCATTTTGTGACCCGTCTGTTAGTACGGCCGTATTTACGCGA TATGCAGGGTGACTTGGTTCCAGAGAACGTCACGGCGGCGGGCCGCCACTTAGTCGTCCGGATGACCACGTATGCTTACC GTGATTGGGACGCGTACCTGGTCCATGAATACGATGAACAACATCTGATCAAAAACGAGAAGGGGCTGACGAATGCAGCG TATTATGACAAGCTGGAAGCGGTCGAATTAAAGTATGCTGATCATATTTATGCCGAGGTGTTGGCCGACACTTATCAGGA GTTTGTGAAGGTGTTAGTCCCCAATCAGCTAGAACGTTTTGAAATCATGTCAAGTGACTTGCGGCCGTTATTAGCTAAAA ATCCGGGGTTGCGCATTCGATTGGCCGCCATTGTCAATCGGCATTTTAAGTTGGACCAGGATGGCTATGAACACGTGATG GACACGCCCCTGCAAGAAATCAAACAAAAATACCAATTTTATCGTGAAAACTTTAGTTGA
Upstream 100 bases:
>100_bases AAATCTTAGGCATGATCAGTGGTAATTTAGAACGTACAGATACAACTCCAAGGGGATATGTGCCAATTCGTTTTGGGGTG TTTCCCTAATAGGATTTGCA
Downstream 100 bases:
>100_bases GGAGGCAGTTGCTGATGACCGTAGATGCACAGTTAGGTACCGAGGCGTTTGAAAAAGTGATCTTTATGCTCGACATCGTC CCGACCAAGGACAATATCCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 339; Mature: 339
Protein sequence:
>339_residues MVGCYAEFNEVNGERSFVMAKFNFTLNAARMDASGHYDFQNVFEFPDFVEMRPTLRAAVRTVAREAFDQPVLPVKVERMT TSLEEQLERETRKYERQVGVYDNQKSERNQLVRLFTQVLQVISRTDEITEELEDIIYAVNQTRLSLIGLPALEGTGELYD ADRDRELIVGTYYHFVTRLLVRPYLRDMQGDLVPENVTAAGRHLVVRMTTYAYRDWDAYLVHEYDEQHLIKNEKGLTNAA YYDKLEAVELKYADHIYAEVLADTYQEFVKVLVPNQLERFEIMSSDLRPLLAKNPGLRIRLAAIVNRHFKLDQDGYEHVM DTPLQEIKQKYQFYRENFS
Sequences:
>Translated_339_residues MVGCYAEFNEVNGERSFVMAKFNFTLNAARMDASGHYDFQNVFEFPDFVEMRPTLRAAVRTVAREAFDQPVLPVKVERMT TSLEEQLERETRKYERQVGVYDNQKSERNQLVRLFTQVLQVISRTDEITEELEDIIYAVNQTRLSLIGLPALEGTGELYD ADRDRELIVGTYYHFVTRLLVRPYLRDMQGDLVPENVTAAGRHLVVRMTTYAYRDWDAYLVHEYDEQHLIKNEKGLTNAA YYDKLEAVELKYADHIYAEVLADTYQEFVKVLVPNQLERFEIMSSDLRPLLAKNPGLRIRLAAIVNRHFKLDQDGYEHVM DTPLQEIKQKYQFYRENFS >Mature_339_residues MVGCYAEFNEVNGERSFVMAKFNFTLNAARMDASGHYDFQNVFEFPDFVEMRPTLRAAVRTVAREAFDQPVLPVKVERMT TSLEEQLERETRKYERQVGVYDNQKSERNQLVRLFTQVLQVISRTDEITEELEDIIYAVNQTRLSLIGLPALEGTGELYD ADRDRELIVGTYYHFVTRLLVRPYLRDMQGDLVPENVTAAGRHLVVRMTTYAYRDWDAYLVHEYDEQHLIKNEKGLTNAA YYDKLEAVELKYADHIYAEVLADTYQEFVKVLVPNQLERFEIMSSDLRPLLAKNPGLRIRLAAIVNRHFKLDQDGYEHVM DTPLQEIKQKYQFYRENFS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39773; Mature: 39773
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVGCYAEFNEVNGERSFVMAKFNFTLNAARMDASGHYDFQNVFEFPDFVEMRPTLRAAVR CCCCCHHHHHCCCCCEEEEEEEEEEEEEEEECCCCCCCHHHHHCCCCHHHHHHHHHHHHH TVAREAFDQPVLPVKVERMTTSLEEQLERETRKYERQVGVYDNQKSERNQLVRLFTQVLQ HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH VISRTDEITEELEDIIYAVNQTRLSLIGLPALEGTGELYDADRDRELIVGTYYHFVTRLL HHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHH VRPYLRDMQGDLVPENVTAAGRHLVVRMTTYAYRDWDAYLVHEYDEQHLIKNEKGLTNAA HHHHHHHHCCCCCCCCHHHCCCEEEEEEEHHHEECCCEEEEECCCHHHHHHCCCCCCHHH YYDKLEAVELKYADHIYAEVLADTYQEFVKVLVPNQLERFEIMSSDLRPLLAKNPGLRIR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEE LAAIVNRHFKLDQDGYEHVMDTPLQEIKQKYQFYRENFS HHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure MVGCYAEFNEVNGERSFVMAKFNFTLNAARMDASGHYDFQNVFEFPDFVEMRPTLRAAVR CCCCCHHHHHCCCCCEEEEEEEEEEEEEEEECCCCCCCHHHHHCCCCHHHHHHHHHHHHH TVAREAFDQPVLPVKVERMTTSLEEQLERETRKYERQVGVYDNQKSERNQLVRLFTQVLQ HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH VISRTDEITEELEDIIYAVNQTRLSLIGLPALEGTGELYDADRDRELIVGTYYHFVTRLL HHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHH VRPYLRDMQGDLVPENVTAAGRHLVVRMTTYAYRDWDAYLVHEYDEQHLIKNEKGLTNAA HHHHHHHHCCCCCCCCHHHCCCEEEEEEEHHHEECCCEEEEECCCHHHHHHCCCCCCHHH YYDKLEAVELKYADHIYAEVLADTYQEFVKVLVPNQLERFEIMSSDLRPLLAKNPGLRIR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEE LAAIVNRHFKLDQDGYEHVMDTPLQEIKQKYQFYRENFS HHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA