Click here to switch to the map view.

The map label for this gene is 28378199

Identifier: 28378199

GI number: 28378199

Start: 1357506

End: 1358384

Strand: Direct

Name: 28378199

Synonym: lp_1483

Alternate gene names: NA

Gene position: 1357506-1358384 (Clockwise)

Preceding gene: 28378198

Following gene: 28378213

Centisome position: 41.03

GC content: 46.87

Gene sequence:

>879_bases
ATGGATATTAAAAAGTTTGTGGCTCGTCGTAAAGCCCTACAAATTTCACAAATTAAATTATCGGCCGGTATTTGTACCCA
GGCCACGCTCAGCAAGTTCGAACGGCGCGGTCGCGTGCCATCGCTGGCTATCTTAGAACAGTTATGTGCCCGCCTGGGGT
TGACTGTTGATGAGCTAAACGAGGACCAAGCGAGTTCGGTGACCCAAATGCGGCAAGAATTGGACCATATTGAACGTCAG
CTGATGATGGAGGATTATCAAGTGGTGCTGCAAGCTTTGAATCGGATTGCAGTCAGCGAAATTGCGGCGGTTCCGTTACG
GATGCAATATTATTATTTGAGTGGGCTACTGAAATCATTGATCAATGGTGCCGTGAGTGATGTTTGCTTTGACTTCGATC
AAATCTTAGATGATTTGGACCAGACGCATGAAACGGTATTTACCCCGCTGGCCTATGTCGGCTTGGGGGTCATGTATAGT
CGATTGTCAGAATTGGCGAAGGCCCAATTTTACTTTGAAAAGGTCCATCAAGCAGTCAAGCAGGCTTTGGTCAATGGTGA
TGACCAGGACTATTTACGGCTACTGACGATGATTTTTTATACGGCTGAATACGAAGCGACTCGCGAAGATTTTACCACTA
GCAACGGGCTAATCAATGATGGTGTATCACTTTGTTCAGAGCAGCATGTCACCTACTATTTACCACGACTGAAATATTTG
GCGACGGCTAATGCCATTCAACAGTGCCAACCTGACGAGCAGATTCAACAACTTTTAAGTGAAACAGTTGCGTTTGCACG
GATCAACCACAATCAAGTTGTGGAGGTCAAGGCTGCGGCCCTGCGGCGACGTTATTTGCAAGCACGCAAGCATGCCTAG

Upstream 100 bases:

>100_bases
TTTGGGAACCAGCCTGGGACATGAGCAAAATGAGCCGCTTTGCTAAGGTAGCGCTCGGCATTCATGGTTAACCAGTAATT
CGGTAAGGGGTTGCGCGCGA

Downstream 100 bases:

>100_bases
GCCGATATAGTTGAACCACCATCATCTCGTTAACATGAATTTGAATATTTTTAAACGACCATTTCTCAGTAGAATGAGGG
ATGGTCGTTTTGGTGTCATA

Product: hypothetical protein

Products: NA

Alternate protein names: Regulator; XRE Family Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator Cro/CI Family; Cro/CI Family Transcriptional Regulator

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MDIKKFVARRKALQISQIKLSAGICTQATLSKFERRGRVPSLAILEQLCARLGLTVDELNEDQASSVTQMRQELDHIERQ
LMMEDYQVVLQALNRIAVSEIAAVPLRMQYYYLSGLLKSLINGAVSDVCFDFDQILDDLDQTHETVFTPLAYVGLGVMYS
RLSELAKAQFYFEKVHQAVKQALVNGDDQDYLRLLTMIFYTAEYEATREDFTTSNGLINDGVSLCSEQHVTYYLPRLKYL
ATANAIQQCQPDEQIQQLLSETVAFARINHNQVVEVKAAALRRRYLQARKHA

Sequences:

>Translated_292_residues
MDIKKFVARRKALQISQIKLSAGICTQATLSKFERRGRVPSLAILEQLCARLGLTVDELNEDQASSVTQMRQELDHIERQ
LMMEDYQVVLQALNRIAVSEIAAVPLRMQYYYLSGLLKSLINGAVSDVCFDFDQILDDLDQTHETVFTPLAYVGLGVMYS
RLSELAKAQFYFEKVHQAVKQALVNGDDQDYLRLLTMIFYTAEYEATREDFTTSNGLINDGVSLCSEQHVTYYLPRLKYL
ATANAIQQCQPDEQIQQLLSETVAFARINHNQVVEVKAAALRRRYLQARKHA
>Mature_292_residues
MDIKKFVARRKALQISQIKLSAGICTQATLSKFERRGRVPSLAILEQLCARLGLTVDELNEDQASSVTQMRQELDHIERQ
LMMEDYQVVLQALNRIAVSEIAAVPLRMQYYYLSGLLKSLINGAVSDVCFDFDQILDDLDQTHETVFTPLAYVGLGVMYS
RLSELAKAQFYFEKVHQAVKQALVNGDDQDYLRLLTMIFYTAEYEATREDFTTSNGLINDGVSLCSEQHVTYYLPRLKYL
ATANAIQQCQPDEQIQQLLSETVAFARINHNQVVEVKAAALRRRYLQARKHA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33269; Mature: 33269

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA