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The map label for this gene is yhaM [H]

Identifier: 28378146

GI number: 28378146

Start: 1299184

End: 1300164

Strand: Direct

Name: yhaM [H]

Synonym: lp_1418

Alternate gene names: 28378146

Gene position: 1299184-1300164 (Clockwise)

Preceding gene: 28378145

Following gene: 28378147

Centisome position: 39.27

GC content: 45.77

Gene sequence:

>981_bases
ATGGCAAAGAAGTTATTTGATTATCAATTAGATGAAACCGTGGATGGCTATTTTTTGTTGAAAGATTCGGAAGTTCGCAT
CGCCAAGAACGGCAAGAAGTTTTTAGCCATTAATTTTCAGGATACTTCCGGCGAGATTTCCGGGAAGTTTTGGGATGCAA
GCGATACAGATGTCGAAAACTTTCAGGCAGGTCGGATCGTTCATCTGAAAGGTAAACGCGAAAACTATCAGGGTAATCCG
CAAATCAAAATTCAACAAATGCGGCTCACTCATAGTGGCGAACCGCAAGAAGTGCAACAATTTGTGGAACACGCACCACT
AAAGACCGACACGATGGCGGATGAAATCAATCAGTTTGTCTTTGAAATTACTGAACCTAATTGGAATCGAATTGTTCGCC
ACATGTTAACGACATTTCATGACCGGTTCTTTAGCTATCCCGCGGCGAAGAAAAATCATCACGCGTTCGCCGGTGGCTTA
GCCTATCACACGTTATCAATTTTGCGCTTAGCTAAGGCAGTTGCTGATCAGTATCCCCACGTTAACCGGGCCTTACTATA
CGCCGGTGCGATTTTGCACGACATGGGTAAGACGATTGAAATGTCGGGGCCGGTCTCGACGACTTATACGTTGGCAGGGA
ACTTGGTCGGTCACATTGTCCTGATCGATGAACAAATCGTGGAGACTTGTCAACAGTTGAAAATTGACGAGCAGTCGGAA
TCTGTTTTAGTCTTGCGGCATACGATTCTTGCGCACCATGGTTTGTTAGAATATGGGTCACCCGTTCGGCCCCATATTAT
GGAAGCTGAAATCTTACATGACTTGGACGAGTTGGACGCGTCGATTCAAATGATGCAGACTTCACTTGGACATGCAGAGC
CGGGCACGTATACGGAGCGGATCTTTGCTATGGATGGTCGTAACTTTTACCGGCCAACTGGTGATCAAACGAAGGGCGAA
TTACCAGACGAACAAAACTAA

Upstream 100 bases:

>100_bases
GTTGCTCAGCATCATCAAGTGCTCTACTTTACGAATGAGACAGCGGCACTGACCCAACTGAAGACAGCGACTGTACAGCA
GTTAACCTAGGGGGGATAAC

Downstream 100 bases:

>100_bases
CTAAATCGATACGGTGTTTGAAAGAACTGTTGAAATCAATGATTTTAACAGTTTTTTTGTGACCTTTATTTTTGATGACG
AATTCCATTGGGGTGGGTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 325

Protein sequence:

>326_residues
MAKKLFDYQLDETVDGYFLLKDSEVRIAKNGKKFLAINFQDTSGEISGKFWDASDTDVENFQAGRIVHLKGKRENYQGNP
QIKIQQMRLTHSGEPQEVQQFVEHAPLKTDTMADEINQFVFEITEPNWNRIVRHMLTTFHDRFFSYPAAKKNHHAFAGGL
AYHTLSILRLAKAVADQYPHVNRALLYAGAILHDMGKTIEMSGPVSTTYTLAGNLVGHIVLIDEQIVETCQQLKIDEQSE
SVLVLRHTILAHHGLLEYGSPVRPHIMEAEILHDLDELDASIQMMQTSLGHAEPGTYTERIFAMDGRNFYRPTGDQTKGE
LPDEQN

Sequences:

>Translated_326_residues
MAKKLFDYQLDETVDGYFLLKDSEVRIAKNGKKFLAINFQDTSGEISGKFWDASDTDVENFQAGRIVHLKGKRENYQGNP
QIKIQQMRLTHSGEPQEVQQFVEHAPLKTDTMADEINQFVFEITEPNWNRIVRHMLTTFHDRFFSYPAAKKNHHAFAGGL
AYHTLSILRLAKAVADQYPHVNRALLYAGAILHDMGKTIEMSGPVSTTYTLAGNLVGHIVLIDEQIVETCQQLKIDEQSE
SVLVLRHTILAHHGLLEYGSPVRPHIMEAEILHDLDELDASIQMMQTSLGHAEPGTYTERIFAMDGRNFYRPTGDQTKGE
LPDEQN
>Mature_325_residues
AKKLFDYQLDETVDGYFLLKDSEVRIAKNGKKFLAINFQDTSGEISGKFWDASDTDVENFQAGRIVHLKGKRENYQGNPQ
IKIQQMRLTHSGEPQEVQQFVEHAPLKTDTMADEINQFVFEITEPNWNRIVRHMLTTFHDRFFSYPAAKKNHHAFAGGLA
YHTLSILRLAKAVADQYPHVNRALLYAGAILHDMGKTIEMSGPVSTTYTLAGNLVGHIVLIDEQIVETCQQLKIDEQSES
VLVLRHTILAHHGLLEYGSPVRPHIMEAEILHDLDELDASIQMMQTSLGHAEPGTYTERIFAMDGRNFYRPTGDQTKGEL
PDEQN

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OB DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 36992; Mature: 36861

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKLFDYQLDETVDGYFLLKDSEVRIAKNGKKFLAINFQDTSGEISGKFWDASDTDVEN
CCCCCCCCCCCCCCCCEEEEECCCEEEEECCCEEEEEEEECCCCCCCCEEECCCCCCCCC
FQAGRIVHLKGKRENYQGNPQIKIQQMRLTHSGEPQEVQQFVEHAPLKTDTMADEINQFV
CCCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
FEITEPNWNRIVRHMLTTFHDRFFSYPAAKKNHHAFAGGLAYHTLSILRLAKAVADQYPH
EEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
VNRALLYAGAILHDMGKTIEMSGPVSTTYTLAGNLVGHIVLIDEQIVETCQQLKIDEQSE
CCHHHHHHHHHHHHCCCEEEECCCCCEEEEEECCCEEEEEEECHHHHHHHHHCCCCCCCC
SVLVLRHTILAHHGLLEYGSPVRPHIMEAEILHDLDELDASIQMMQTSLGHAEPGTYTER
CEEHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHE
IFAMDGRNFYRPTGDQTKGELPDEQN
EEEECCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AKKLFDYQLDETVDGYFLLKDSEVRIAKNGKKFLAINFQDTSGEISGKFWDASDTDVEN
CCCCCCCCCCCCCCCEEEEECCCEEEEECCCEEEEEEEECCCCCCCCEEECCCCCCCCC
FQAGRIVHLKGKRENYQGNPQIKIQQMRLTHSGEPQEVQQFVEHAPLKTDTMADEINQFV
CCCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
FEITEPNWNRIVRHMLTTFHDRFFSYPAAKKNHHAFAGGLAYHTLSILRLAKAVADQYPH
EEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
VNRALLYAGAILHDMGKTIEMSGPVSTTYTLAGNLVGHIVLIDEQIVETCQQLKIDEQSE
CCHHHHHHHHHHHHCCCEEEECCCCCEEEEEECCCEEEEEEECHHHHHHHHHCCCCCCCC
SVLVLRHTILAHHGLLEYGSPVRPHIMEAEILHDLDELDASIQMMQTSLGHAEPGTYTER
CEEHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHE
IFAMDGRNFYRPTGDQTKGELPDEQN
EEEECCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]