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The map label for this gene is pltR [H]

Identifier: 28378099

GI number: 28378099

Start: 1245172

End: 1245939

Strand: Direct

Name: pltR [H]

Synonym: lp_1356

Alternate gene names: 28378099

Gene position: 1245172-1245939 (Clockwise)

Preceding gene: 28378098

Following gene: 28378100

Centisome position: 37.64

GC content: 42.71

Gene sequence:

>768_bases
GTGTTAAAGACCTTTGTTGTGGAAGACGATCCTGAACAATTAGCAACCTTAAAGCAAATCATTAAGAATCATATTATGAT
TAATGATTTTGATATGGAACTGACCTTAGCAACCGGACAAGCACAAACGTTGTTGGACTATGTCGAGACCAATTCCGATC
TTGAGGGACTCTACTTTTTAGATATTGAATATCCTGGGCAAGACTTAAATGGCCTAGCACTGGCGACTCGAATTCGCGAG
GCGGATGTTAATGCGCGGATTGTCTTCGTGTCGACCCATTCTGAAATGGCCTTTTTGACCTTTGAACGACGAATCGAACC
ACTGGACTTTATTGTGAAAGATTTGGGTCAAGAAACGGTCAAAGCCAAAGTGGAGACAGATATTCGGGTTGCTTATGAAC
GTTATACCAAGCAAGCAGTCACCAGCAGGGCCATGTTTTCTTACTCTAAGGGTGGTCAGCTCTTCAATGTTCCATTAGAT
CAGGTGTTATTTATCGAGACTGGAGCAGTTCGCAATAAGCTGGTTCTCCATTTAACAGATCGAATTGTTCAATACAATGG
TAAGATTAGTGATGAAACCGTGGCCCACCCAGAGTTATTCCGGGTTCATAAGAGTTTCTTGGTGAACCCGCAAATGCTAG
TACGAATTGATAAGCAACATCAGCTTGGCTACTTTGAAAATGGCGAGTCGGTCGATATTGCGATTCGTAAAATGCATGAT
TTAATCGCATTGATCAAGCGCTCCGAACTGGCAGTCACGTTTAGCTAG

Upstream 100 bases:

>100_bases
CCGTTCGTGAGTTGTTAGATCCATTAGCTAACGTGACTTATGAAGTGAGCTCCCATCAACGATTCGAATTTATTATTAGT
ATTGAAAGTGAGTGAGCAGC

Downstream 100 bases:

>100_bases
CTTCGCTTAAGACTCTAATGTAACAAAATCGTTAATCAAAAGTGAATTTTAATGACGTTGGTGCAGGCTATTATGAGCTT
TGCACCTTTTTTGGCTTTTT

Product: response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MLKTFVVEDDPEQLATLKQIIKNHIMINDFDMELTLATGQAQTLLDYVETNSDLEGLYFLDIEYPGQDLNGLALATRIRE
ADVNARIVFVSTHSEMAFLTFERRIEPLDFIVKDLGQETVKAKVETDIRVAYERYTKQAVTSRAMFSYSKGGQLFNVPLD
QVLFIETGAVRNKLVLHLTDRIVQYNGKISDETVAHPELFRVHKSFLVNPQMLVRIDKQHQLGYFENGESVDIAIRKMHD
LIALIKRSELAVTFS

Sequences:

>Translated_255_residues
MLKTFVVEDDPEQLATLKQIIKNHIMINDFDMELTLATGQAQTLLDYVETNSDLEGLYFLDIEYPGQDLNGLALATRIRE
ADVNARIVFVSTHSEMAFLTFERRIEPLDFIVKDLGQETVKAKVETDIRVAYERYTKQAVTSRAMFSYSKGGQLFNVPLD
QVLFIETGAVRNKLVLHLTDRIVQYNGKISDETVAHPELFRVHKSFLVNPQMLVRIDKQHQLGYFENGESVDIAIRKMHD
LIALIKRSELAVTFS
>Mature_255_residues
MLKTFVVEDDPEQLATLKQIIKNHIMINDFDMELTLATGQAQTLLDYVETNSDLEGLYFLDIEYPGQDLNGLALATRIRE
ADVNARIVFVSTHSEMAFLTFERRIEPLDFIVKDLGQETVKAKVETDIRVAYERYTKQAVTSRAMFSYSKGGQLFNVPLD
QVLFIETGAVRNKLVLHLTDRIVQYNGKISDETVAHPELFRVHKSFLVNPQMLVRIDKQHQLGYFENGESVDIAIRKMHD
LIALIKRSELAVTFS

Specific function: Required for high-level post-exponential phase expression of a series of secreted proteins [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 29170; Mature: 29170

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKTFVVEDDPEQLATLKQIIKNHIMINDFDMELTLATGQAQTLLDYVETNSDLEGLYFL
CCEEEEECCCHHHHHHHHHHHHHCEEEEECCEEEEEECCCHHHHHHHHHCCCCCCEEEEE
DIEYPGQDLNGLALATRIREADVNARIVFVSTHSEMAFLTFERRIEPLDFIVKDLGQETV
EEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCEEEEEHHHCCCHHHHHHHHCCHHHH
KAKVETDIRVAYERYTKQAVTSRAMFSYSKGGQLFNVPLDQVLFIETGAVRNKLVLHLTD
HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEECCCCEEEEEECCCCCCEEEEEEEH
RIVQYNGKISDETVAHPELFRVHKSFLVNPQMLVRIDKQHQLGYFENGESVDIAIRKMHD
HHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHEEEECCCCCCCCCCCCCEEEHHHHHHHH
LIALIKRSELAVTFS
HHHHHHCCCEEEEEC
>Mature Secondary Structure
MLKTFVVEDDPEQLATLKQIIKNHIMINDFDMELTLATGQAQTLLDYVETNSDLEGLYFL
CCEEEEECCCHHHHHHHHHHHHHCEEEEECCEEEEEECCCHHHHHHHHHCCCCCCEEEEE
DIEYPGQDLNGLALATRIREADVNARIVFVSTHSEMAFLTFERRIEPLDFIVKDLGQETV
EEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCEEEEEHHHCCCHHHHHHHHCCHHHH
KAKVETDIRVAYERYTKQAVTSRAMFSYSKGGQLFNVPLDQVLFIETGAVRNKLVLHLTD
HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEECCCCEEEEEECCCCCCEEEEEEEH
RIVQYNGKISDETVAHPELFRVHKSFLVNPQMLVRIDKQHQLGYFENGESVDIAIRKMHD
HHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHEEEECCCCCCCCCCCCCEEEHHHHHHHH
LIALIKRSELAVTFS
HHHHHHCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA