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The map label for this gene is ydeD [H]

Identifier: 28378087

GI number: 28378087

Start: 1234692

End: 1235630

Strand: Direct

Name: ydeD [H]

Synonym: lp_1343

Alternate gene names: 28378087

Gene position: 1234692-1235630 (Clockwise)

Preceding gene: 28378086

Following gene: 28378089

Centisome position: 37.32

GC content: 40.58

Gene sequence:

>939_bases
ATGAAGCGTTTAGTTGGAACTCTGTGCGGTATTATTAGTGCCGCTTTATTTGGGCTAGGTGGAATACTAGCACAGCCTTT
GTTAAGTGAGCAAGTTCTGACTCCGCAACAGATTGTATTGTTACGGCTGTTAATCGGTGGGGCAATGTTGTTGCTATATC
GTAACTTGTTTTTCAAGCAGGCTAGAAAAAGCACGAAAAAGATTTGGACACATTGGCGAATTTTAACACGAATTATGATA
TACGGCATCGCCGGCTTGTGCACGGCACAAATTGCCTTTTTTTCTGCGATTAATTACAGTAATGCAGCAGTTGCAACTGT
TTTTCAGTCCACTAGTCCGTTTATTCTGCTTGTATTTACCGCGCTGAAAGCGAAAAGACTTCCCAGTTTATTAGCAGGAA
TGAGCTTAATAAGCGCATTGATGGGAATCTGGCTTATTGTTGAATCCGGATTTAAGACCGGATTAATAAAACCGGAAGCA
ATTATTTTTGGCCTGATTGCGGCTATCGGGGTTATCTTATACACCAAACTACCTGTTCCATTGTTAAACCAAATTGCCGC
AGTGGATATTTTGGGATGGGCACTAGTTATTGGCGGTGTGATAGCGTTGATTCACACACCGTTACCAAATTTAGTTAGAT
TTTCAAAAACGCAGCTTTTAGCGGTTCTTATCATTGTTATTCTAGCCACCGTTGTTGCGTATGATCTTTATTTAGAAAGT
TTAAAGCTAATAGACGGATTTCTGGCAACTATGACTGGACTATTTGAACCAATCAGTTCCGTACTTTTTGGCATGTTATT
CTTGCACCAAATCTTGGTTCCTCAGGCCTTGGTTGGTATTATATTGGTTGTGGGTGCAATTATGATACTGAATTTACCTC
ACCATATCACGGCACCTGTTCCCAGCAAAACCTGTCAATGTACGATGTCTAATCAATAG

Upstream 100 bases:

>100_bases
GTTTGCTAGGGCAGCAGCCAATGCCTTATTTAATGATGACTACCACAATCAAAGTGTTGCTATTTCTAATGGTGAACTAT
TATAGAGGAGAAACTTTTGT

Downstream 100 bases:

>100_bases
GGAATGATAAGCGATCAATAATATCAAAAGTACTGGCTTTAACAACATATTGAAGAAATACTGCCAATTAAAACGCTGGG
TTTAGAGAATTCTAAACCTA

Product: transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MKRLVGTLCGIISAALFGLGGILAQPLLSEQVLTPQQIVLLRLLIGGAMLLLYRNLFFKQARKSTKKIWTHWRILTRIMI
YGIAGLCTAQIAFFSAINYSNAAVATVFQSTSPFILLVFTALKAKRLPSLLAGMSLISALMGIWLIVESGFKTGLIKPEA
IIFGLIAAIGVILYTKLPVPLLNQIAAVDILGWALVIGGVIALIHTPLPNLVRFSKTQLLAVLIIVILATVVAYDLYLES
LKLIDGFLATMTGLFEPISSVLFGMLFLHQILVPQALVGIILVVGAIMILNLPHHITAPVPSKTCQCTMSNQ

Sequences:

>Translated_312_residues
MKRLVGTLCGIISAALFGLGGILAQPLLSEQVLTPQQIVLLRLLIGGAMLLLYRNLFFKQARKSTKKIWTHWRILTRIMI
YGIAGLCTAQIAFFSAINYSNAAVATVFQSTSPFILLVFTALKAKRLPSLLAGMSLISALMGIWLIVESGFKTGLIKPEA
IIFGLIAAIGVILYTKLPVPLLNQIAAVDILGWALVIGGVIALIHTPLPNLVRFSKTQLLAVLIIVILATVVAYDLYLES
LKLIDGFLATMTGLFEPISSVLFGMLFLHQILVPQALVGIILVVGAIMILNLPHHITAPVPSKTCQCTMSNQ
>Mature_312_residues
MKRLVGTLCGIISAALFGLGGILAQPLLSEQVLTPQQIVLLRLLIGGAMLLLYRNLFFKQARKSTKKIWTHWRILTRIMI
YGIAGLCTAQIAFFSAINYSNAAVATVFQSTSPFILLVFTALKAKRLPSLLAGMSLISALMGIWLIVESGFKTGLIKPEA
IIFGLIAAIGVILYTKLPVPLLNQIAAVDILGWALVIGGVIALIHTPLPNLVRFSKTQLLAVLIIVILATVVAYDLYLES
LKLIDGFLATMTGLFEPISSVLFGMLFLHQILVPQALVGIILVVGAIMILNLPHHITAPVPSKTCQCTMSNQ

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI1790092, Length=259, Percent_Identity=30.5019305019305, Blast_Score=105, Evalue=5e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33723; Mature: 33723

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLVGTLCGIISAALFGLGGILAQPLLSEQVLTPQQIVLLRLLIGGAMLLLYRNLFFKQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ARKSTKKIWTHWRILTRIMIYGIAGLCTAQIAFFSAINYSNAAVATVFQSTSPFILLVFT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHH
ALKAKRLPSLLAGMSLISALMGIWLIVESGFKTGLIKPEAIIFGLIAAIGVILYTKLPVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHH
LLNQIAAVDILGWALVIGGVIALIHTPLPNLVRFSKTQLLAVLIIVILATVVAYDLYLES
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKLIDGFLATMTGLFEPISSVLFGMLFLHQILVPQALVGIILVVGAIMILNLPHHITAPV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PSKTCQCTMSNQ
CCCCEEECCCCC
>Mature Secondary Structure
MKRLVGTLCGIISAALFGLGGILAQPLLSEQVLTPQQIVLLRLLIGGAMLLLYRNLFFKQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ARKSTKKIWTHWRILTRIMIYGIAGLCTAQIAFFSAINYSNAAVATVFQSTSPFILLVFT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHH
ALKAKRLPSLLAGMSLISALMGIWLIVESGFKTGLIKPEAIIFGLIAAIGVILYTKLPVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHH
LLNQIAAVDILGWALVIGGVIALIHTPLPNLVRFSKTQLLAVLIIVILATVVAYDLYLES
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKLIDGFLATMTGLFEPISSVLFGMLFLHQILVPQALVGIILVVGAIMILNLPHHITAPV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PSKTCQCTMSNQ
CCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]