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The map label for this gene is pepV [C]

Identifier: 28378070

GI number: 28378070

Start: 1216650

End: 1218053

Strand: Direct

Name: pepV [C]

Synonym: lp_1321

Alternate gene names: 28378070

Gene position: 1216650-1218053 (Clockwise)

Preceding gene: 28378068

Following gene: 28378071

Centisome position: 36.78

GC content: 49.57

Gene sequence:

>1404_bases
ATGTCAGTTGATTGGAAAAATGAAGCAACTAAGCATCAAGATGATTATTTAGCAGATTTAACCACCATGCTCCGCGTACC
GAGCTTTCGTGACGATAGCCAGGCGACGGATGATGCACCCTTAGGCCCTGGTCCTAAGCAAGCGTTAACCACGTTTTTAG
CGATTGCGGAACGCGATGGCTTTAAGACCAAGAACATTGATAACTTGGTCGGTTATGCTGAAATTGGTGAGGGGGATGAA
ACCTTGGCAATTTTAGCCCATGTGGATGAGATGCCTGCTGGTAACGGCTGGGATACGGACCCCTTCGAACCAACCATCAA
GGATGGCAAGATGTATGCCCGCGGCGTTTCCGACGACAAAGGCCCGGGAATGGCGGCCTACTATGGCTTAAAGATTGTCA
AAGAACTTGGCTTGAAGCTCAATAAGAAGATTCGCTTTATCGTCGGGACCGATGAGGAAAGTAATTGGACTGGAATGAAA
CGCTACTTTGAAGTTGAACCAGCGCCAACCTTGGGCTTCTCTCCAGATGCCATGTTCCCGCTGATCAATGGTGAAAAGGG
AAATGTGAGTCTGCAATTACACTTCGGTCATGAAGATAATGGCGACTTTAACCTTGTTTCCTTTGATTCTGGCTTGCGTG
AGAATATGGTGCCGCGTGATGCCGAAGCCGTGGTCGCAACGGATGACAACGAGCAGTTGGCGGCCGACTTCACAGCGTTC
TTGGACCAGCAACCAGTAACTGGTGAATTAACGGTCGTTCCTGAAGGCGTTAAGCTGGAAGTTGTTGGAAAGGCCGCCCA
TGGGATGGAACCACGTAACGGGATCAATGCCGGAACCTACCTTGCAACGTTCTTGACTAACTATGCCTTTGCTGATGATG
CCGCTGCTTTCTTAGACTTCGTGGCTAATAAGCTACACGATGATTCACGGGCGAACCAGTTAGGCTTAGCTTACAAGGAT
GACGTTATGGGTGATTTGACGATGAATGTCGGGTTACTCAGCTTCGACCATCAAAAGGGTGGTGCGTTAACGTTGAACTT
CCGTTATCCGAAGGGAATCGAACCTGCTGATTTAACGGCGAAAGTCCAAGCGCAGTTACCAGCTGGTGCCACGGTCACGC
AGGGTGACTTCATGGTGCCACATTACGTTGACCCTGAAGACCCGATCGTCAAGGATTTGATGGACGTTTACCGGCGTCAA
ACTGGTGACACGGCCTCACAACCACAAATTGTTGGTGGTGGGACTTATGGCCGGATGATGGCTCGTGGGGTTGCCTTTGG
GGCACTCTTCCCAGATACCGAAGATACGATGCACCAAGCCAATGAATTCCAACCAATTGACGAATTAATGGCTGCAATGG
CGATTTACGCTGAATCAATTGCCGTGTTAGCAACCGACAAATAG

Upstream 100 bases:

>100_bases
TACTTTGAGTATACCATTTTCCAAAAGCGGTTACTTACGATTATTAAGTTGACGACAGCTATGATAAAATTGAGGTAACA
ATATGTGGGAGGAATTTAAC

Downstream 100 bases:

>100_bases
TGATCCTTTAATGGAGGGTGATGGTTATGACGATGGTTAAACGCATTTTAGTCGGCATCGATACGAGTCCTCAGTCCCAA
TTAGCTTTAACGAAAGCAAT

Product: dipeptidase PepV

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 466

Protein sequence:

>467_residues
MSVDWKNEATKHQDDYLADLTTMLRVPSFRDDSQATDDAPLGPGPKQALTTFLAIAERDGFKTKNIDNLVGYAEIGEGDE
TLAILAHVDEMPAGNGWDTDPFEPTIKDGKMYARGVSDDKGPGMAAYYGLKIVKELGLKLNKKIRFIVGTDEESNWTGMK
RYFEVEPAPTLGFSPDAMFPLINGEKGNVSLQLHFGHEDNGDFNLVSFDSGLRENMVPRDAEAVVATDDNEQLAADFTAF
LDQQPVTGELTVVPEGVKLEVVGKAAHGMEPRNGINAGTYLATFLTNYAFADDAAAFLDFVANKLHDDSRANQLGLAYKD
DVMGDLTMNVGLLSFDHQKGGALTLNFRYPKGIEPADLTAKVQAQLPAGATVTQGDFMVPHYVDPEDPIVKDLMDVYRRQ
TGDTASQPQIVGGGTYGRMMARGVAFGALFPDTEDTMHQANEFQPIDELMAAMAIYAESIAVLATDK

Sequences:

>Translated_467_residues
MSVDWKNEATKHQDDYLADLTTMLRVPSFRDDSQATDDAPLGPGPKQALTTFLAIAERDGFKTKNIDNLVGYAEIGEGDE
TLAILAHVDEMPAGNGWDTDPFEPTIKDGKMYARGVSDDKGPGMAAYYGLKIVKELGLKLNKKIRFIVGTDEESNWTGMK
RYFEVEPAPTLGFSPDAMFPLINGEKGNVSLQLHFGHEDNGDFNLVSFDSGLRENMVPRDAEAVVATDDNEQLAADFTAF
LDQQPVTGELTVVPEGVKLEVVGKAAHGMEPRNGINAGTYLATFLTNYAFADDAAAFLDFVANKLHDDSRANQLGLAYKD
DVMGDLTMNVGLLSFDHQKGGALTLNFRYPKGIEPADLTAKVQAQLPAGATVTQGDFMVPHYVDPEDPIVKDLMDVYRRQ
TGDTASQPQIVGGGTYGRMMARGVAFGALFPDTEDTMHQANEFQPIDELMAAMAIYAESIAVLATDK
>Mature_466_residues
SVDWKNEATKHQDDYLADLTTMLRVPSFRDDSQATDDAPLGPGPKQALTTFLAIAERDGFKTKNIDNLVGYAEIGEGDET
LAILAHVDEMPAGNGWDTDPFEPTIKDGKMYARGVSDDKGPGMAAYYGLKIVKELGLKLNKKIRFIVGTDEESNWTGMKR
YFEVEPAPTLGFSPDAMFPLINGEKGNVSLQLHFGHEDNGDFNLVSFDSGLRENMVPRDAEAVVATDDNEQLAADFTAFL
DQQPVTGELTVVPEGVKLEVVGKAAHGMEPRNGINAGTYLATFLTNYAFADDAAAFLDFVANKLHDDSRANQLGLAYKDD
VMGDLTMNVGLLSFDHQKGGALTLNFRYPKGIEPADLTAKVQAQLPAGATVTQGDFMVPHYVDPEDPIVKDLMDVYRRQT
GDTASQPQIVGGGTYGRMMARGVAFGALFPDTEDTMHQANEFQPIDELMAAMAIYAESIAVLATDK

Specific function: Unknown

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family [H]

Homologues:

Organism=Escherichia coli, GI1789236, Length=195, Percent_Identity=28.2051282051282, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17563146, Length=181, Percent_Identity=30.3867403314917, Blast_Score=73, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193211059, Length=87, Percent_Identity=42.5287356321839, Blast_Score=72, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010964
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF01546 Peptidase_M20 [H]

EC number: NA

Molecular weight: Translated: 50799; Mature: 50668

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVDWKNEATKHQDDYLADLTTMLRVPSFRDDSQATDDAPLGPGPKQALTTFLAIAERDG
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
FKTKNIDNLVGYAEIGEGDETLAILAHVDEMPAGNGWDTDPFEPTIKDGKMYARGVSDDK
CCCCCHHHHCCCCCCCCCCCEEEEEEEHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
GPGMAAYYGLKIVKELGLKLNKKIRFIVGTDEESNWTGMKRYFEVEPAPTLGFSPDAMFP
CCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCE
LINGEKGNVSLQLHFGHEDNGDFNLVSFDSGLRENMVPRDAEAVVATDDNEQLAADFTAF
EEECCCCCEEEEEEECCCCCCCEEEEEECCCHHHCCCCCCCCEEEEECCCCHHHHHHHHH
LDQQPVTGELTVVPEGVKLEVVGKAAHGMEPRNGINAGTYLATFLTNYAFADDAAAFLDF
HCCCCCCCEEEEECCCEEEEEEECHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
VANKLHDDSRANQLGLAYKDDVMGDLTMNVGLLSFDHQKGGALTLNFRYPKGIEPADLTA
HHHHHCCCCCCCCCCCEECCCCCCEEEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCEE
KVQAQLPAGATVTQGDFMVPHYVDPEDPIVKDLMDVYRRQTGDTASQPQIVGGGTYGRMM
EEEEECCCCCEEECCCEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHH
ARGVAFGALFPDTEDTMHQANEFQPIDELMAAMAIYAESIAVLATDK
HHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCEEEEEECC
>Mature Secondary Structure 
SVDWKNEATKHQDDYLADLTTMLRVPSFRDDSQATDDAPLGPGPKQALTTFLAIAERDG
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
FKTKNIDNLVGYAEIGEGDETLAILAHVDEMPAGNGWDTDPFEPTIKDGKMYARGVSDDK
CCCCCHHHHCCCCCCCCCCCEEEEEEEHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
GPGMAAYYGLKIVKELGLKLNKKIRFIVGTDEESNWTGMKRYFEVEPAPTLGFSPDAMFP
CCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCE
LINGEKGNVSLQLHFGHEDNGDFNLVSFDSGLRENMVPRDAEAVVATDDNEQLAADFTAF
EEECCCCCEEEEEEECCCCCCCEEEEEECCCHHHCCCCCCCCEEEEECCCCHHHHHHHHH
LDQQPVTGELTVVPEGVKLEVVGKAAHGMEPRNGINAGTYLATFLTNYAFADDAAAFLDF
HCCCCCCCEEEEECCCEEEEEEECHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
VANKLHDDSRANQLGLAYKDDVMGDLTMNVGLLSFDHQKGGALTLNFRYPKGIEPADLTA
HHHHHCCCCCCCCCCCEECCCCCCEEEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCEE
KVQAQLPAGATVTQGDFMVPHYVDPEDPIVKDLMDVYRRQTGDTASQPQIVGGGTYGRMM
EEEEECCCCCEEECCCEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHH
ARGVAFGALFPDTEDTMHQANEFQPIDELMAAMAIYAESIAVLATDK
HHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA