| Definition | Lactobacillus plantarum WCFS1, complete genome. |
|---|---|
| Accession | NC_004567 |
| Length | 3,308,274 |
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The map label for this gene is leuS
Identifier: 28378066
GI number: 28378066
Start: 1210182
End: 1212608
Strand: Direct
Name: leuS
Synonym: lp_1316
Alternate gene names: 28378066
Gene position: 1210182-1212608 (Clockwise)
Preceding gene: 28378063
Following gene: 28378067
Centisome position: 36.58
GC content: 46.39
Gene sequence:
>2427_bases ATGGCATACAACCATAAAGTCATTGAACGCAAATGGCAACATTATTGGAAGGAAAACAAAACCTTCAAAACATTAGATAC GACGGATAAGAAGAAGTATTACGCCTTAGACATGTTCCCATACCCATCTGGTCAAGGATTACACGTTGGACATCCTGAAG GGTATACGGCCACGGATATTATGTCACGGTTCAAGCGGATGCAAGGGTACAATGTCTTACATCCAATGGGTTGGGACGCA TTCGGTTTACCCGCTGAACAATATGCGCTCAAGACGGGGCATAACCCGAAGGACTTTACGGCCAAGAACATCAAAAACTT CAAACGTCAGATTCGGTCATTAGGTTTTTCATATGACTGGGACCGTGAAGTGAATACGACTGATCCAAGTTACTACAAGT GGACGCAGTGGATCTTTGAACAGCTCTATAAGAAGGGCTTGGCTTACGAATCTGAAACGTTGGTCAACTGGGCTCCTGAT ATGATGGGTGGAACGGTTGTTTCTAACGAAGAAGTGGTTGATGGTAAGACGGAACGCGGTGGCTATGATGTTTACCGGGT GCCAATGAAGCAATGGAGCCTCAAAATCACGGCCTATGCGGACCGGTTGATTGATGACCTGGACGATATTGATTGGCCAG AAAACATCAAAGAGCAACAACGTAACTGGATTGGCCGCTCAGTTGGCGCATCCATTCGTTTCAAGGTTGCTGGTCAACCT GACGATACCGAGATTGAAGTGTTCTCAACGCGGCCAGACACGCTGTTTGGCGCAAGTTACATGGTCTTGGCACCTGAACA CGACTTAGTTGAACAATTGACGACACCCGAACAAGCGGACGCTATCAAAGCATACAAAGCTAAAATCGCCAGCAAGTCAG ACCTTGAACGGACTGATTTGAATAAGGACAAGACCGGGGTCTTCACTGGTAGCTACGGCATCAACCCGGTTAATGGTGAA AAACTGCCAATCTGGATTGCCGATTACGTTCTGGCTTCATATGGAACTGGGGCCATCATGGCAGTGCCTGCTCATGATGA TCGGGACTTTGAATTTGCACAAAAATTTGATTTGCCAATCAAACCTGTCATTGCGGGTGATAATGATTATGACCAACAAG CTTACACTGGCGACGGGGAACACATCAACTCAGGTTTTGTTGACGGTTTAGCTAAGCAACCAGCTATTGATAAGATGATT GACTGGTTAGGTGAACACCATGCCGGTGAAAAGAAGGTCAACTATCGGTTACGTGATTGGATCTTCTCACGGCAACGGTA CTGGGGCGAACCGATTCCAGTTATTCACTGGGAAGACGGCGAAACGACGTTGGTTCCTGAAGATGAACTACCATTGCGGT TACCAGCAACTAAGAACCTGGAACCATCAGGAACTGGTGAAAGCCCGTTAGCGAATATCGACGACTGGGTAAATGTCGTC GATGAAAACGGTCGTAAGGGGAAGCGTGAAACCAACACGATGCCACAATGGGCCGGGAGTTCATGGTACTTCTTGCGTTA CGTTGATCCGCACAACCGTGAAGCTTTGGCCGATTATGACAAGTTGAAGTACTGGTCACCCGTTGACTTATACGTGGGCG GTGCAGAACACGCGGTCTTACATCTGCTTTACGCACGTTTCTGGCACAAGTTCTTATATGACTTAGGCGTTGTGCCAACC AAGGAACCATTCCAGAAGTTAGTTAACCAAGGGATGATTTTGGGTGATAATCACGAAAAGATGTCTAAGTCGCGGGGGAA CGTGGTTAACCCCGATGATATTGTTGACCAATATGGTGCCGATACGTTGCGGTTATACGAAATGTTCATGGGACCATTGG AAGCTTCGATTCCGTGGAGTACCGATGGGTTACATGGTGCCAATAAGTGGATCGAACGGGTTTGGCGCTTAATGATCGAT GAAAACAATCGTGTTCGCGACCGAATCACGACTATCAATGATGGTAAGTTGACGAAAATCTACAACGAAACCGTTAAGAA AGTCACGGAAGACTATGAAGCTATGCGCTTTAACATTGCGATTTCACAAATGATGGTCTTCGTAAACGAAGCATACAAGG TCGACGATTTACCAATCATTTATATCGAAGGCTTTGTGAAGTTACTGTCACCGATTGCACCACATTTGTCGGAAGAACTA TGGTCATTATTAGGCCATGATGACACGATCACCTACGCCACTTGGCCAACGTATGACGAATCTAAGTTAGTAGAAGACAC GGTCCAAATCGTGCTTCAAGTTAATGGTAAGGTTCGCTCGCACGCCGAAGTCGCTAAGGATATGGGCAAGGATGAACTTG AAAAACTAGCCCTGGCGGATGAAAAAATCCAGGAATTTACGGCCGGCAAGACAGTTCGTAAAGTGATTGCCATTCCTGGT AAACTGGTTAACGTGGTTGCCAACTAA
Upstream 100 bases:
>100_bases CTTTTACTGAGTTGAAGCATGAAAATGCCATCTTGAATAGTCAGTTGGAAAGTCGCAATGCTAGCTTTTACATACAAGGC AGCAAGAAAGGGGCACTACT
Downstream 100 bases:
>100_bases GTACCACGACCAGTATCAAGTTAAATGAATATCGCTTAAATTAATCGTGATGGTGACTGACAATTGTTGGTTGCTATCAC GATTTTTTAACTACTCACAG
Product: leucyl-tRNA synthetase
Products: NA
Alternate protein names: Leucine--tRNA ligase; LeuRS
Number of amino acids: Translated: 808; Mature: 807
Protein sequence:
>808_residues MAYNHKVIERKWQHYWKENKTFKTLDTTDKKKYYALDMFPYPSGQGLHVGHPEGYTATDIMSRFKRMQGYNVLHPMGWDA FGLPAEQYALKTGHNPKDFTAKNIKNFKRQIRSLGFSYDWDREVNTTDPSYYKWTQWIFEQLYKKGLAYESETLVNWAPD MMGGTVVSNEEVVDGKTERGGYDVYRVPMKQWSLKITAYADRLIDDLDDIDWPENIKEQQRNWIGRSVGASIRFKVAGQP DDTEIEVFSTRPDTLFGASYMVLAPEHDLVEQLTTPEQADAIKAYKAKIASKSDLERTDLNKDKTGVFTGSYGINPVNGE KLPIWIADYVLASYGTGAIMAVPAHDDRDFEFAQKFDLPIKPVIAGDNDYDQQAYTGDGEHINSGFVDGLAKQPAIDKMI DWLGEHHAGEKKVNYRLRDWIFSRQRYWGEPIPVIHWEDGETTLVPEDELPLRLPATKNLEPSGTGESPLANIDDWVNVV DENGRKGKRETNTMPQWAGSSWYFLRYVDPHNREALADYDKLKYWSPVDLYVGGAEHAVLHLLYARFWHKFLYDLGVVPT KEPFQKLVNQGMILGDNHEKMSKSRGNVVNPDDIVDQYGADTLRLYEMFMGPLEASIPWSTDGLHGANKWIERVWRLMID ENNRVRDRITTINDGKLTKIYNETVKKVTEDYEAMRFNIAISQMMVFVNEAYKVDDLPIIYIEGFVKLLSPIAPHLSEEL WSLLGHDDTITYATWPTYDESKLVEDTVQIVLQVNGKVRSHAEVAKDMGKDELEKLALADEKIQEFTAGKTVRKVIAIPG KLVNVVAN
Sequences:
>Translated_808_residues MAYNHKVIERKWQHYWKENKTFKTLDTTDKKKYYALDMFPYPSGQGLHVGHPEGYTATDIMSRFKRMQGYNVLHPMGWDA FGLPAEQYALKTGHNPKDFTAKNIKNFKRQIRSLGFSYDWDREVNTTDPSYYKWTQWIFEQLYKKGLAYESETLVNWAPD MMGGTVVSNEEVVDGKTERGGYDVYRVPMKQWSLKITAYADRLIDDLDDIDWPENIKEQQRNWIGRSVGASIRFKVAGQP DDTEIEVFSTRPDTLFGASYMVLAPEHDLVEQLTTPEQADAIKAYKAKIASKSDLERTDLNKDKTGVFTGSYGINPVNGE KLPIWIADYVLASYGTGAIMAVPAHDDRDFEFAQKFDLPIKPVIAGDNDYDQQAYTGDGEHINSGFVDGLAKQPAIDKMI DWLGEHHAGEKKVNYRLRDWIFSRQRYWGEPIPVIHWEDGETTLVPEDELPLRLPATKNLEPSGTGESPLANIDDWVNVV DENGRKGKRETNTMPQWAGSSWYFLRYVDPHNREALADYDKLKYWSPVDLYVGGAEHAVLHLLYARFWHKFLYDLGVVPT KEPFQKLVNQGMILGDNHEKMSKSRGNVVNPDDIVDQYGADTLRLYEMFMGPLEASIPWSTDGLHGANKWIERVWRLMID ENNRVRDRITTINDGKLTKIYNETVKKVTEDYEAMRFNIAISQMMVFVNEAYKVDDLPIIYIEGFVKLLSPIAPHLSEEL WSLLGHDDTITYATWPTYDESKLVEDTVQIVLQVNGKVRSHAEVAKDMGKDELEKLALADEKIQEFTAGKTVRKVIAIPG KLVNVVAN >Mature_807_residues AYNHKVIERKWQHYWKENKTFKTLDTTDKKKYYALDMFPYPSGQGLHVGHPEGYTATDIMSRFKRMQGYNVLHPMGWDAF GLPAEQYALKTGHNPKDFTAKNIKNFKRQIRSLGFSYDWDREVNTTDPSYYKWTQWIFEQLYKKGLAYESETLVNWAPDM MGGTVVSNEEVVDGKTERGGYDVYRVPMKQWSLKITAYADRLIDDLDDIDWPENIKEQQRNWIGRSVGASIRFKVAGQPD DTEIEVFSTRPDTLFGASYMVLAPEHDLVEQLTTPEQADAIKAYKAKIASKSDLERTDLNKDKTGVFTGSYGINPVNGEK LPIWIADYVLASYGTGAIMAVPAHDDRDFEFAQKFDLPIKPVIAGDNDYDQQAYTGDGEHINSGFVDGLAKQPAIDKMID WLGEHHAGEKKVNYRLRDWIFSRQRYWGEPIPVIHWEDGETTLVPEDELPLRLPATKNLEPSGTGESPLANIDDWVNVVD ENGRKGKRETNTMPQWAGSSWYFLRYVDPHNREALADYDKLKYWSPVDLYVGGAEHAVLHLLYARFWHKFLYDLGVVPTK EPFQKLVNQGMILGDNHEKMSKSRGNVVNPDDIVDQYGADTLRLYEMFMGPLEASIPWSTDGLHGANKWIERVWRLMIDE NNRVRDRITTINDGKLTKIYNETVKKVTEDYEAMRFNIAISQMMVFVNEAYKVDDLPIIYIEGFVKLLSPIAPHLSEELW SLLGHDDTITYATWPTYDESKLVEDTVQIVLQVNGKVRSHAEVAKDMGKDELEKLALADEKIQEFTAGKTVRKVIAIPGK LVNVVAN
Specific function: Unknown
COG id: COG0495
COG function: function code J; Leucyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family
Homologues:
Organism=Homo sapiens, GI7661872, Length=879, Percent_Identity=31.9681456200228, Blast_Score=452, Evalue=1e-127, Organism=Homo sapiens, GI108773810, Length=249, Percent_Identity=28.9156626506024, Blast_Score=79, Evalue=1e-14, Organism=Homo sapiens, GI94721239, Length=160, Percent_Identity=29.375, Blast_Score=70, Evalue=7e-12, Organism=Homo sapiens, GI94721241, Length=160, Percent_Identity=29.375, Blast_Score=70, Evalue=7e-12, Organism=Escherichia coli, GI1786861, Length=867, Percent_Identity=40.2537485582468, Blast_Score=639, Evalue=0.0, Organism=Escherichia coli, GI1790708, Length=394, Percent_Identity=25.1269035532995, Blast_Score=99, Evalue=1e-21, Organism=Caenorhabditis elegans, GI71997510, Length=834, Percent_Identity=27.5779376498801, Blast_Score=308, Evalue=6e-84, Organism=Caenorhabditis elegans, GI71997517, Length=802, Percent_Identity=28.0548628428928, Blast_Score=306, Evalue=3e-83, Organism=Caenorhabditis elegans, GI212645227, Length=342, Percent_Identity=28.0701754385965, Blast_Score=133, Evalue=5e-31, Organism=Caenorhabditis elegans, GI17510661, Length=921, Percent_Identity=22.5841476655809, Blast_Score=120, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17554638, Length=281, Percent_Identity=26.6903914590747, Blast_Score=80, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17541896, Length=198, Percent_Identity=32.8282828282828, Blast_Score=71, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6323414, Length=886, Percent_Identity=34.5372460496614, Blast_Score=461, Evalue=1e-130, Organism=Saccharomyces cerevisiae, GI6321531, Length=395, Percent_Identity=23.7974683544304, Blast_Score=88, Evalue=4e-18, Organism=Saccharomyces cerevisiae, GI6319395, Length=160, Percent_Identity=31.875, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI21355409, Length=779, Percent_Identity=31.9640564826701, Blast_Score=381, Evalue=1e-105, Organism=Drosophila melanogaster, GI17864482, Length=675, Percent_Identity=22.0740740740741, Blast_Score=111, Evalue=2e-24, Organism=Drosophila melanogaster, GI24653289, Length=675, Percent_Identity=22.0740740740741, Blast_Score=111, Evalue=2e-24, Organism=Drosophila melanogaster, GI28574733, Length=234, Percent_Identity=28.2051282051282, Blast_Score=80, Evalue=7e-15,
Paralogues:
None
Copy number: 800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYL_LACPL (Q88XA9)
Other databases:
- EMBL: AL935255 - RefSeq: NP_784958.1 - ProteinModelPortal: Q88XA9 - SMR: Q88XA9 - GeneID: 1062737 - GenomeReviews: AL935263_GR - KEGG: lpl:lp_1316 - NMPDR: fig|220668.1.peg.1092 - HOGENOM: HBG693845 - OMA: ERGNFPV - ProtClustDB: PRK00390 - BioCyc: LPLA220668:LP_1316-MONOMER - BRENDA: 6.1.1.4 - GO: GO:0005737 - HAMAP: MF_00049_B - InterPro: IPR001412 - InterPro: IPR002300 - InterPro: IPR002302 - InterPro: IPR014729 - InterPro: IPR009080 - InterPro: IPR013155 - InterPro: IPR009008 - Gene3D: G3DSA:3.40.50.620 - PANTHER: PTHR11946:SF7 - PRINTS: PR00985 - TIGRFAMs: TIGR00396
Pfam domain/function: PF08264 Anticodon_1; PF00133 tRNA-synt_1; SSF47323 tRNAsyn_1a_bind; SSF50677 ValRS_IleRS_edit
EC number: =6.1.1.4
Molecular weight: Translated: 92629; Mature: 92498
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: BINDING 583-583
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYNHKVIERKWQHYWKENKTFKTLDTTDKKKYYALDMFPYPSGQGLHVGHPEGYTATDI CCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEEECCCCCCCCEECCCCCCCCHHHH MSRFKRMQGYNVLHPMGWDAFGLPAEQYALKTGHNPKDFTAKNIKNFKRQIRSLGFSYDW HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCC DREVNTTDPSYYKWTQWIFEQLYKKGLAYESETLVNWAPDMMGGTVVSNEEVVDGKTERG CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHCCCEEECCCCCCCCCCCCC GYDVYRVPMKQWSLKITAYADRLIDDLDDIDWPENIKEQQRNWIGRSVGASIRFKVAGQP CCCEEEECHHHHEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC DDTEIEVFSTRPDTLFGASYMVLAPEHDLVEQLTTPEQADAIKAYKAKIASKSDLERTDL CCCEEEEEECCCCCEECCEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHCC NKDKTGVFTGSYGINPVNGEKLPIWIADYVLASYGTGAIMAVPAHDDRDFEFAQKFDLPI CCCCCEEEECCCCCCCCCCCCCEEEHHHHHHHHCCCCEEEEEECCCCCCCHHHHHCCCCC KPVIAGDNDYDQQAYTGDGEHINSGFVDGLAKQPAIDKMIDWLGEHHAGEKKVNYRLRDW CEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHH IFSRQRYWGEPIPVIHWEDGETTLVPEDELPLRLPATKNLEPSGTGESPLANIDDWVNVV HHHHHHHCCCCCCEEEECCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHH DENGRKGKRETNTMPQWAGSSWYFLRYVDPHNREALADYDKLKYWSPVDLYVGGAEHAVL CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCEEEECCHHHHHH HLLYARFWHKFLYDLGVVPTKEPFQKLVNQGMILGDNHEKMSKSRGNVVNPDDIVDQYGA HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCEEECCCHHHHHHCCCCCCCHHHHHHHHCC DTLRLYEMFMGPLEASIPWSTDGLHGANKWIERVWRLMIDENNRVRDRITTINDGKLTKI HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHEECCCCCHHHH YNETVKKVTEDYEAMRFNIAISQMMVFVNEAYKVDDLPIIYIEGFVKLLSPIAPHLSEEL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCCEEHHHHHHHHHHHHHHHHHHHH WSLLGHDDTITYATWPTYDESKLVEDTVQIVLQVNGKVRSHAEVAKDMGKDELEKLALAD HHHHCCCCEEEEEECCCCCHHHHHHHHHHEEHEECCCHHHHHHHHHHCCHHHHHHHHHHH EKIQEFTAGKTVRKVIAIPGKLVNVVAN HHHHHHHHHHHHHHHHHCCCHHHHHHCC >Mature Secondary Structure AYNHKVIERKWQHYWKENKTFKTLDTTDKKKYYALDMFPYPSGQGLHVGHPEGYTATDI CCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEEECCCCCCCCEECCCCCCCCHHHH MSRFKRMQGYNVLHPMGWDAFGLPAEQYALKTGHNPKDFTAKNIKNFKRQIRSLGFSYDW HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCC DREVNTTDPSYYKWTQWIFEQLYKKGLAYESETLVNWAPDMMGGTVVSNEEVVDGKTERG CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHCCCEEECCCCCCCCCCCCC GYDVYRVPMKQWSLKITAYADRLIDDLDDIDWPENIKEQQRNWIGRSVGASIRFKVAGQP CCCEEEECHHHHEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC DDTEIEVFSTRPDTLFGASYMVLAPEHDLVEQLTTPEQADAIKAYKAKIASKSDLERTDL CCCEEEEEECCCCCEECCEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHCC NKDKTGVFTGSYGINPVNGEKLPIWIADYVLASYGTGAIMAVPAHDDRDFEFAQKFDLPI CCCCCEEEECCCCCCCCCCCCCEEEHHHHHHHHCCCCEEEEEECCCCCCCHHHHHCCCCC KPVIAGDNDYDQQAYTGDGEHINSGFVDGLAKQPAIDKMIDWLGEHHAGEKKVNYRLRDW CEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHH IFSRQRYWGEPIPVIHWEDGETTLVPEDELPLRLPATKNLEPSGTGESPLANIDDWVNVV HHHHHHHCCCCCCEEEECCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHH DENGRKGKRETNTMPQWAGSSWYFLRYVDPHNREALADYDKLKYWSPVDLYVGGAEHAVL CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCEEEECCHHHHHH HLLYARFWHKFLYDLGVVPTKEPFQKLVNQGMILGDNHEKMSKSRGNVVNPDDIVDQYGA HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCEEECCCHHHHHHCCCCCCCHHHHHHHHCC DTLRLYEMFMGPLEASIPWSTDGLHGANKWIERVWRLMIDENNRVRDRITTINDGKLTKI HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHEECCCCCHHHH YNETVKKVTEDYEAMRFNIAISQMMVFVNEAYKVDDLPIIYIEGFVKLLSPIAPHLSEEL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCCEEHHHHHHHHHHHHHHHHHHHH WSLLGHDDTITYATWPTYDESKLVEDTVQIVLQVNGKVRSHAEVAKDMGKDELEKLALAD HHHHCCCCEEEEEECCCCCHHHHHHHHHHEEHEECCCHHHHHHHHHHCCHHHHHHHHHHH EKIQEFTAGKTVRKVIAIPGKLVNVVAN HHHHHHHHHHHHHHHHHCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12566566