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The map label for this gene is yoeC [H]

Identifier: 28378033

GI number: 28378033

Start: 1153425

End: 1153985

Strand: Direct

Name: yoeC [H]

Synonym: lp_1268

Alternate gene names: 28378033

Gene position: 1153425-1153985 (Clockwise)

Preceding gene: 28378032

Following gene: 28378035

Centisome position: 34.86

GC content: 43.67

Gene sequence:

>561_bases
ATGGAGCGTATGCATTATAATGTTGAACCGCTAAGAACGGACCAAGAAATCGATGATTTTTTATGGGCTGTTTCACAAGC
GCGTTATGGGGAGCGTAATCGCATGATTGTTTTGGTTGGAATTAACACGGGATTACGAATGAGTGATATTTTACGACTGA
AGGTTGGGCAAGTACGTGGCAAAGATCGTGTTATGATCATGGAACAAAAAACGGGCAAGAAGCGCTGGTTGTTTTTGAAA
AACCTCAAAACGGAATTAGCCCACTTTACGCGGTATCGGGGGGCAAATGAACCGTTATTCTGTAGTGGTCGGGGCGGAGC
TTTAACCGTTAATGGTGTCTATCGAGTCTTTCAGACGGCCGGTGAGTACCTGGAGCGGGATGATATTGGTACGCACACGT
TGCGCAAGACATTTGGCTATCATTATTATCAAAAGACTCGTGACATTGCCGGATTGATGATGATTTTCAATCATTCGAGC
GAGCAGGTGACAAAACGCTATATTGGCATTGAGCGTGATAATTTGGAACGACAATTATGGGACTTTAAATTAGGCGTTTA
A

Upstream 100 bases:

>100_bases
TTTAGCACTTAATAGTGGGGAGCATTATAGGTTAACAATTACTTTGTTTAGTTTACTCTAGGTTAAGTAATTTAAACTTA
ATAAGATTGATTGAGGTGTA

Downstream 100 bases:

>100_bases
TTATGGCAGAGACGCGGGCTATTCATAGCGACTCAATGAGGATTTGAGGTAGGCACAAAAAAGAGCCAGAAGTGTAAACG
ATTGTTTACGCTTCTGGCTC

Product: integrase/recombinase, fragment (putative)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MERMHYNVEPLRTDQEIDDFLWAVSQARYGERNRMIVLVGINTGLRMSDILRLKVGQVRGKDRVMIMEQKTGKKRWLFLK
NLKTELAHFTRYRGANEPLFCSGRGGALTVNGVYRVFQTAGEYLERDDIGTHTLRKTFGYHYYQKTRDIAGLMMIFNHSS
EQVTKRYIGIERDNLERQLWDFKLGV

Sequences:

>Translated_186_residues
MERMHYNVEPLRTDQEIDDFLWAVSQARYGERNRMIVLVGINTGLRMSDILRLKVGQVRGKDRVMIMEQKTGKKRWLFLK
NLKTELAHFTRYRGANEPLFCSGRGGALTVNGVYRVFQTAGEYLERDDIGTHTLRKTFGYHYYQKTRDIAGLMMIFNHSS
EQVTKRYIGIERDNLERQLWDFKLGV
>Mature_186_residues
MERMHYNVEPLRTDQEIDDFLWAVSQARYGERNRMIVLVGINTGLRMSDILRLKVGQVRGKDRVMIMEQKTGKKRWLFLK
NLKTELAHFTRYRGANEPLFCSGRGGALTVNGVYRVFQTAGEYLERDDIGTHTLRKTFGYHYYQKTRDIAGLMMIFNHSS
EQVTKRYIGIERDNLERQLWDFKLGV

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 21902; Mature: 21902

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERMHYNVEPLRTDQEIDDFLWAVSQARYGERNRMIVLVGINTGLRMSDILRLKVGQVRG
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCC
KDRVMIMEQKTGKKRWLFLKNLKTELAHFTRYRGANEPLFCSGRGGALTVNGVYRVFQTA
CCEEEEEECCCCCCEEHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEHHHHHHHHHHH
GEYLERDDIGTHTLRKTFGYHYYQKTRDIAGLMMIFNHSSEQVTKRYIGIERDNLERQLW
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHH
DFKLGV
HHCCCC
>Mature Secondary Structure
MERMHYNVEPLRTDQEIDDFLWAVSQARYGERNRMIVLVGINTGLRMSDILRLKVGQVRG
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCC
KDRVMIMEQKTGKKRWLFLKNLKTELAHFTRYRGANEPLFCSGRGGALTVNGVYRVFQTA
CCEEEEEECCCCCCEEHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEHHHHHHHHHHH
GEYLERDDIGTHTLRKTFGYHYYQKTRDIAGLMMIFNHSSEQVTKRYIGIERDNLERQLW
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHH
DFKLGV
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]