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The map label for this gene is cps1C [H]

Identifier: 28377953

GI number: 28377953

Start: 1076392

End: 1077819

Strand: Direct

Name: cps1C [H]

Synonym: lp_1179

Alternate gene names: 28377953

Gene position: 1076392-1077819 (Clockwise)

Preceding gene: 28377952

Following gene: 28377954

Centisome position: 32.54

GC content: 33.82

Gene sequence:

>1428_bases
ATGAAAATAATACGTAACTACTTGTATAACGCAAGTTATCAAGTTTTAATTTTATTGACACCATTAATAACGGTGCCATA
TGTCGCACGAGTACTTGGTCCTACTGGAGTAGGTGTTTACTCATATACGAATTCAATTATTACGTATTTTGTGTTAATTG
GAACGCTTGGAATAACTGTATATGGTAATCAACAAATTGCTTTTCATAGAGATGATATAATAGAGCGCTCGAGGACTTTT
TGGGAAATCGAGTTATTACAAGCCGTAAACGTTGGAATAACTTTTCTAGGATTTGGTATCTTTTTGATTCTTGATCATCG
TTATCAACTATTTATGGTCTTTCAATCTTGCCAATTATTAGCAGGAGCGTTTGATGTGTCATGGTTCTTCATGGGAATTG
AAGATTTTAAAAAAACAGTTTTTCGAAATACATTGGTGAAGATTGCAACATTAGGTGCGATTTTTATTTTCGTTAGAACT
CAATCGGATCTGGGGTTGTATATACTTATATTGGCCCTGTCACAACTAGTTGGTAATTTTACGTTGTGGCCCTATTTAAA
AACTCGGTTGGTAAGAATAAAATTCAAAGATTTGAAAATTTGGCATCATTATGTCCCAGCCTTAATGTTATTTGTACCAC
AAGCTGCTAATTTGGTTTATCAACAAGTTAATAAAACAATGCTGGGGAATCTGGATACTGTTAACTCTGTCGCGTATTTT
GATTACGCAGATAAATTGATAAAGACAGTGCTAGCGGTAGTAACTGCAACCGGAATTGTCATGTTACCTCATATGGCTAA
CCTGCACGCCAAAGGGAAAAATGAAACGATAAAAAGGTATTTGTACAAATCGTTTGAATTTGTTTCAATGATAGCATTGC
CTCTTGGATTTGGAATTGCAGGAATTGCAACAACGCTTGCGCCTATTTATTTTGGACAAGACTTTAGTATTTCAGGAAAA
CTGTTAATAATAGAAGCCCCCGTAATACTTTTGATAGGTTGGAGCAACGTTATTGGACAACAGTATATGATGCCTACAGA
ACAAATTTCTAAATACACAAAATCAGTAATTATTGGAGCAATTGTCAACGTGATTTTAAATGTGCCATTGATTATGTATT
TAGGTGCAGTAGGTGCTCCAATTGCAACTGTAGCAGCAGAACTATCTGTTACGCTATATCAACTATTCGTTGTCAGAAAA
CAGATACAAATCAATTTATTATTTTCTGATTTTTGGAAGTACTTATTTTCATCAACAGTGATGTTTATTGTTGTTTATGG
TTTAAATGTTTCAATGCCAATGTCAATCATTAATCTAATTGTACAAATTGTTGAAGGAATGATTATCTATTTAGGTATGT
TGCTGGTTCTTCAACCAAAGTTAGTAGTAGAGGGTAAATCGTTATTGTTAGGAAAGCTTCACAAATAG

Upstream 100 bases:

>100_bases
GACAACAAAATGTTTTGAAGTTAACATTCGATTCGTCGGCGCATTTGTTTGAGCATGCAATTGATTTAGCGTGATCTAGG
AAGGTAAATTTTATTAAGGT

Downstream 100 bases:

>100_bases
GAGGTTCAAAAATGGATATTAAGATACTGGTTGCAGCACACAAAGAGGCAAAGATGCCGACTGATAAAAATCTATATTTA
CCAATTCATGTGGGTGCGGC

Product: transporter

Products: lipopolysaccharide [Periplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 475; Mature: 475

Protein sequence:

>475_residues
MKIIRNYLYNASYQVLILLTPLITVPYVARVLGPTGVGVYSYTNSIITYFVLIGTLGITVYGNQQIAFHRDDIIERSRTF
WEIELLQAVNVGITFLGFGIFLILDHRYQLFMVFQSCQLLAGAFDVSWFFMGIEDFKKTVFRNTLVKIATLGAIFIFVRT
QSDLGLYILILALSQLVGNFTLWPYLKTRLVRIKFKDLKIWHHYVPALMLFVPQAANLVYQQVNKTMLGNLDTVNSVAYF
DYADKLIKTVLAVVTATGIVMLPHMANLHAKGKNETIKRYLYKSFEFVSMIALPLGFGIAGIATTLAPIYFGQDFSISGK
LLIIEAPVILLIGWSNVIGQQYMMPTEQISKYTKSVIIGAIVNVILNVPLIMYLGAVGAPIATVAAELSVTLYQLFVVRK
QIQINLLFSDFWKYLFSSTVMFIVVYGLNVSMPMSIINLIVQIVEGMIIYLGMLLVLQPKLVVEGKSLLLGKLHK

Sequences:

>Translated_475_residues
MKIIRNYLYNASYQVLILLTPLITVPYVARVLGPTGVGVYSYTNSIITYFVLIGTLGITVYGNQQIAFHRDDIIERSRTF
WEIELLQAVNVGITFLGFGIFLILDHRYQLFMVFQSCQLLAGAFDVSWFFMGIEDFKKTVFRNTLVKIATLGAIFIFVRT
QSDLGLYILILALSQLVGNFTLWPYLKTRLVRIKFKDLKIWHHYVPALMLFVPQAANLVYQQVNKTMLGNLDTVNSVAYF
DYADKLIKTVLAVVTATGIVMLPHMANLHAKGKNETIKRYLYKSFEFVSMIALPLGFGIAGIATTLAPIYFGQDFSISGK
LLIIEAPVILLIGWSNVIGQQYMMPTEQISKYTKSVIIGAIVNVILNVPLIMYLGAVGAPIATVAAELSVTLYQLFVVRK
QIQINLLFSDFWKYLFSSTVMFIVVYGLNVSMPMSIINLIVQIVEGMIIYLGMLLVLQPKLVVEGKSLLLGKLHK
>Mature_475_residues
MKIIRNYLYNASYQVLILLTPLITVPYVARVLGPTGVGVYSYTNSIITYFVLIGTLGITVYGNQQIAFHRDDIIERSRTF
WEIELLQAVNVGITFLGFGIFLILDHRYQLFMVFQSCQLLAGAFDVSWFFMGIEDFKKTVFRNTLVKIATLGAIFIFVRT
QSDLGLYILILALSQLVGNFTLWPYLKTRLVRIKFKDLKIWHHYVPALMLFVPQAANLVYQQVNKTMLGNLDTVNSVAYF
DYADKLIKTVLAVVTATGIVMLPHMANLHAKGKNETIKRYLYKSFEFVSMIALPLGFGIAGIATTLAPIYFGQDFSISGK
LLIIEAPVILLIGWSNVIGQQYMMPTEQISKYTKSVIIGAIVNVILNVPLIMYLGAVGAPIATVAAELSVTLYQLFVVRK
QIQINLLFSDFWKYLFSSTVMFIVVYGLNVSMPMSIINLIVQIVEGMIIYLGMLLVLQPKLVVEGKSLLLGKLHK

Specific function: May be involved in the translocation process of the nascent O-polysaccharide molecules and/or its ligation to lipid A core units [H]

COG id: COG2244

COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

Organism=Escherichia coli, GI1788349, Length=402, Percent_Identity=23.134328358209, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002797 [H]

Pfam domain/function: PF01943 Polysacc_synt [H]

EC number: NA

Molecular weight: Translated: 53432; Mature: 53432

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIIRNYLYNASYQVLILLTPLITVPYVARVLGPTGVGVYSYTNSIITYFVLIGTLGITV
CHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCEEE
YGNQQIAFHRDDIIERSRTFWEIELLQAVNVGITFLGFGIFLILDHRYQLFMVFQSCQLL
ECCCEEEEEHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
AGAFDVSWFFMGIEDFKKTVFRNTLVKIATLGAIFIFVRTQSDLGLYILILALSQLVGNF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCHHHHHHHHHHHHCCC
TLWPYLKTRLVRIKFKDLKIWHHYVPALMLFVPQAANLVYQQVNKTMLGNLDTVNSVAYF
EEHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
DYADKLIKTVLAVVTATGIVMLPHMANLHAKGKNETIKRYLYKSFEFVSMIALPLGFGIA
HHHHHHHHHHHHHHHHCCHHEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH
GIATTLAPIYFGQDFSISGKLLIIEAPVILLIGWSNVIGQQYMMPTEQISKYTKSVIIGA
HHHHHHHHHHCCCCCCCCCEEEEEECCEEEEEECHHHHCHHHCCCHHHHHHHHHHHHHHH
IVNVILNVPLIMYLGAVGAPIATVAAELSVTLYQLFVVRKQIQINLLFSDFWKYLFSSTV
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHH
MFIVVYGLNVSMPMSIINLIVQIVEGMIIYLGMLLVLQPKLVVEGKSLLLGKLHK
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCHHHHCCCCC
>Mature Secondary Structure
MKIIRNYLYNASYQVLILLTPLITVPYVARVLGPTGVGVYSYTNSIITYFVLIGTLGITV
CHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCEEE
YGNQQIAFHRDDIIERSRTFWEIELLQAVNVGITFLGFGIFLILDHRYQLFMVFQSCQLL
ECCCEEEEEHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
AGAFDVSWFFMGIEDFKKTVFRNTLVKIATLGAIFIFVRTQSDLGLYILILALSQLVGNF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCHHHHHHHHHHHHCCC
TLWPYLKTRLVRIKFKDLKIWHHYVPALMLFVPQAANLVYQQVNKTMLGNLDTVNSVAYF
EEHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
DYADKLIKTVLAVVTATGIVMLPHMANLHAKGKNETIKRYLYKSFEFVSMIALPLGFGIA
HHHHHHHHHHHHHHHHCCHHEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH
GIATTLAPIYFGQDFSISGKLLIIEAPVILLIGWSNVIGQQYMMPTEQISKYTKSVIIGA
HHHHHHHHHHCCCCCCCCCEEEEEECCEEEEEECHHHHCHHHCCCHHHHHHHHHHHHHHH
IVNVILNVPLIMYLGAVGAPIATVAAELSVTLYQLFVVRKQIQINLLFSDFWKYLFSSTV
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHH
MFIVVYGLNVSMPMSIINLIVQIVEGMIIYLGMLLVLQPKLVVEGKSLLLGKLHK
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: lipopolysaccharide [Cytoplasm] [C]

Specific reaction: lipopolysaccharide [Cytoplasm] = lipopolysaccharide [Periplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7517390; 7517391; 9097040; 9278503 [H]