| Definition | Lactobacillus plantarum WCFS1, complete genome. |
|---|---|
| Accession | NC_004567 |
| Length | 3,308,274 |
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The map label for this gene is cps1A
Identifier: 28377951
GI number: 28377951
Start: 1074307
End: 1075299
Strand: Direct
Name: cps1A
Synonym: lp_1177
Alternate gene names: NA
Gene position: 1074307-1075299 (Clockwise)
Preceding gene: 28377950
Following gene: 28377952
Centisome position: 32.47
GC content: 33.03
Gene sequence:
>993_bases TTGGGCGTTGAGACTTTGAACAAGGTTTTTAAAATAGCAAAGAAATTTTATACTGATATAAGATATTATTCATTCCAATT AGCATGTATTCATCTAGGAGAAACATTTAGCCGGTATACAAAATTTAACTTGGCAGATAAATATTATTTGAAAAAGGATA AGATAGTACTAAATTATTTACGTACCAGATACACGAATAGTCCTAAGCAGGATGTATACGGAGGAGTACCGAAAATATAT CAACCAATATGGGTATTTTGGTATCAAGGGGAAGAACAGATGCCAAAGCTTGTAAGCGCATGTCTTAAAAGTGTACGTAA TAATGCCAATGGACATGAGGTAATTTTAATATCAAAGGAAAACATGAATAATTATATAGAAATTCCTGATGTTATTCGAG ATAGAGTCGAGTCCAAGAAAATTTCGATGGCACAATACAGTGATATTATTCGAATGTGTTTGTTGGCAGAGTATGGTGGG TTGTGGATTGACGCTACGGTGCTTGTGACTCAGTTAATCCCCCAATATATTTTTGAGCTACCTTTGTTTACCATAAAGAA TAGTCCAAATCAGGAGGATCCATTATATTTTATTAGTGTATCGCATCTGAGATGGACTACATATGTAATGGGAGGTGAAC CTAACAATGCGTTGTTTACATTCGTTCGGGATCTATTAATTGAATATAACAGTGTAGAAAATGCACTTATTGATTATCTG TTAATAGACTATGCGATTGAGCTCGCAATTGAAAAGAATTCTAGCATTTCTGATGATATGATAAAAATTCCAATCAATAA CCAGTTAAAGGAAGAATTTGTGCATAGGTTGTTTTCCGTTTATCCAGACTGCAAGACAAAAGAGTTATTACAGAGTGGTA CTATTTTCTTTAAACTTTCATATAAAAAAGTCGCGCCAAAAGTAATAGAAAAAAACAATTATCAATTACTGGTAGATGGT GATTTATGTCAAGCTTATAACATGGGGAATTAA
Upstream 100 bases:
>100_bases GATTTTTGGTGGGCGCTTAGGGCAATATCGGTACTATGATATGCACCAAGTGATTCACGCGGCATTAGTTACTGTTAACA AAATTTCAAATCTATAAAGG
Downstream 100 bases:
>100_bases GATAATGAAAATAACATTTATATTGCCAGGATTTACACGTTTTCCGGTTGGAGGATATCAAATTGTTTATCAATATGCAG GTTACCTTTCTAGTAAAGGT
Product: polysaccharide biosynthesis protein
Products: NA
Alternate protein names: Capsular Polysaccharide Synthesis; Polysaccharide Biosynthesis Protein; Glycosyl Transferase; Alpha(1 2)Galactosyltransferase EpsI; Teichoic Acid/Polysaccharide Biosynthesis Protein; Glycosyltransferase; Capsular Polysaccharide Biosynthesis Protein
Number of amino acids: Translated: 330; Mature: 329
Protein sequence:
>330_residues MGVETLNKVFKIAKKFYTDIRYYSFQLACIHLGETFSRYTKFNLADKYYLKKDKIVLNYLRTRYTNSPKQDVYGGVPKIY QPIWVFWYQGEEQMPKLVSACLKSVRNNANGHEVILISKENMNNYIEIPDVIRDRVESKKISMAQYSDIIRMCLLAEYGG LWIDATVLVTQLIPQYIFELPLFTIKNSPNQEDPLYFISVSHLRWTTYVMGGEPNNALFTFVRDLLIEYNSVENALIDYL LIDYAIELAIEKNSSISDDMIKIPINNQLKEEFVHRLFSVYPDCKTKELLQSGTIFFKLSYKKVAPKVIEKNNYQLLVDG DLCQAYNMGN
Sequences:
>Translated_330_residues MGVETLNKVFKIAKKFYTDIRYYSFQLACIHLGETFSRYTKFNLADKYYLKKDKIVLNYLRTRYTNSPKQDVYGGVPKIY QPIWVFWYQGEEQMPKLVSACLKSVRNNANGHEVILISKENMNNYIEIPDVIRDRVESKKISMAQYSDIIRMCLLAEYGG LWIDATVLVTQLIPQYIFELPLFTIKNSPNQEDPLYFISVSHLRWTTYVMGGEPNNALFTFVRDLLIEYNSVENALIDYL LIDYAIELAIEKNSSISDDMIKIPINNQLKEEFVHRLFSVYPDCKTKELLQSGTIFFKLSYKKVAPKVIEKNNYQLLVDG DLCQAYNMGN >Mature_329_residues GVETLNKVFKIAKKFYTDIRYYSFQLACIHLGETFSRYTKFNLADKYYLKKDKIVLNYLRTRYTNSPKQDVYGGVPKIYQ PIWVFWYQGEEQMPKLVSACLKSVRNNANGHEVILISKENMNNYIEIPDVIRDRVESKKISMAQYSDIIRMCLLAEYGGL WIDATVLVTQLIPQYIFELPLFTIKNSPNQEDPLYFISVSHLRWTTYVMGGEPNNALFTFVRDLLIEYNSVENALIDYLL IDYAIELAIEKNSSISDDMIKIPINNQLKEEFVHRLFSVYPDCKTKELLQSGTIFFKLSYKKVAPKVIEKNNYQLLVDGD LCQAYNMGN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38501; Mature: 38370
Theoretical pI: Translated: 7.83; Mature: 7.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVETLNKVFKIAKKFYTDIRYYSFQLACIHLGETFSRYTKFNLADKYYLKKDKIVLNYL CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHH RTRYTNSPKQDVYGGVPKIYQPIWVFWYQGEEQMPKLVSACLKSVRNNANGHEVILISKE HHHCCCCCCHHHCCCCHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC NMNNYIEIPDVIRDRVESKKISMAQYSDIIRMCLLAEYGGLWIDATVLVTQLIPQYIFEL CCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHC PLFTIKNSPNQEDPLYFISVSHLRWTTYVMGGEPNNALFTFVRDLLIEYNSVENALIDYL CCEEECCCCCCCCCEEEEEEECEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LIDYAIELAIEKNSSISDDMIKIPINNQLKEEFVHRLFSVYPDCKTKELLQSGTIFFKLS HHHHHHHEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCEEEEEE YKKVAPKVIEKNNYQLLVDGDLCQAYNMGN HHHHCHHHHCCCCCEEEEECCHHHHCCCCC >Mature Secondary Structure GVETLNKVFKIAKKFYTDIRYYSFQLACIHLGETFSRYTKFNLADKYYLKKDKIVLNYL CHHHHHHHHHHHHHHHHHHHHHEEEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHH RTRYTNSPKQDVYGGVPKIYQPIWVFWYQGEEQMPKLVSACLKSVRNNANGHEVILISKE HHHCCCCCCHHHCCCCHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC NMNNYIEIPDVIRDRVESKKISMAQYSDIIRMCLLAEYGGLWIDATVLVTQLIPQYIFEL CCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHC PLFTIKNSPNQEDPLYFISVSHLRWTTYVMGGEPNNALFTFVRDLLIEYNSVENALIDYL CCEEECCCCCCCCCEEEEEEECEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LIDYAIELAIEKNSSISDDMIKIPINNQLKEEFVHRLFSVYPDCKTKELLQSGTIFFKLS HHHHHHHEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCEEEEEE YKKVAPKVIEKNNYQLLVDGDLCQAYNMGN HHHHCHHHHCCCCCEEEEECCHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA