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The map label for this gene is ygjR [H]

Identifier: 28377938

GI number: 28377938

Start: 1059262

End: 1060269

Strand: Direct

Name: ygjR [H]

Synonym: lp_1161

Alternate gene names: 28377938

Gene position: 1059262-1060269 (Clockwise)

Preceding gene: 28377937

Following gene: 28377939

Centisome position: 32.02

GC content: 47.42

Gene sequence:

>1008_bases
ATGTTAAAATTAGGAATTATCGGAACGAATTGGATTACGCAACAATTTATTGATGCTGCCGCTGCCTCTGGTGAATGGCA
ATTGACGAGTGTTTATTCCCGCCATGCTGAGACCGCGCAGGCTTTTGCCGCCAAGAATCATGCCGATGAGACTTTTACGG
ATTTAGATGCATTTTTCAGTCGGGGTAGTTTTGATACGGTCTACATTGCGTCACCAAACAGTCTGCATTTTGCCCAGGCT
AAACAAGCAATCGCCTATGGTAAGCACGTCATCGTCGAGAAGCCAGCCGTGGCGAACCAACAAGAATTTGAACAGTTAGA
TGCCGTTTTAAAGGCTCACCCTGATGTCCTATTATTTGAAGCAGCACGCCAGATTCACGAAGTTAATTTCCAACGCGTCA
AGGATCAGATTAAAAAGTTATCCTTAGTTCAGGGTGCGACGTTGACTTACATGAAGTACTCGTCACGGTATGACGCCGTC
TTGGCTGGTGAAGAACCGAATATCTTCTCGTTGAACTTTGCCGGTGGGGCGCTTCAGGATTTAGGCGTGTACCTGGCCTA
CGATGCAGTCGGCTGGTTCGGCATGCCGGAAGAGGTGGCTTACTACCCAACCTTGATTCGAACGGGCGTTGACGGTAAGG
GTGTGGCTATTTTACGCTACGCTGACTTTACGGTGACCTTGAACGTTGGTAAGACTAGTGATTCGTTCTTACCATCTGAA
ATCAACGGTCTGCGCGACGCTATTGTGATGGACAATCCTGCTGAACTTGGACAAATCACTTATCAAGATAAGGATGGTCA
GGAGCATGCGATTGGGGCGCAACCCGATACCAATCCAATGCTGGCCGAGGCGCGCGATTTCGCAACCGTTATCAATGACC
CAAGTAATCACCAGACGGAATACTTAGCTTGGCGGCAACTTAGTCGAAATGTTAATAAACTATTATTTAATTTGCGGCAG
TCAGGGCACCTATATTTTACGGGTGAAGCCCCTGATACCGATAAATAG

Upstream 100 bases:

>100_bases
TAGCGGCGAAAACTGGTAAAATAGAACTAGAAGCTAAACGCACGAGTAAGCGCCACCAATCACGACTGGTTGACTAGCGC
CGTTGAGAGGAGTCAAATCG

Downstream 100 bases:

>100_bases
AAATGAGGCACTATGTTAGACGTATTTAAAACTAAATTTGCGGCGGCGGGGTTCACCGAGTTATCGCCGATTCAAACGGC
AGTGGCCGAGCCACTTGCAG

Product: oxidoreductase (putative)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MLKLGIIGTNWITQQFIDAAAASGEWQLTSVYSRHAETAQAFAAKNHADETFTDLDAFFSRGSFDTVYIASPNSLHFAQA
KQAIAYGKHVIVEKPAVANQQEFEQLDAVLKAHPDVLLFEAARQIHEVNFQRVKDQIKKLSLVQGATLTYMKYSSRYDAV
LAGEEPNIFSLNFAGGALQDLGVYLAYDAVGWFGMPEEVAYYPTLIRTGVDGKGVAILRYADFTVTLNVGKTSDSFLPSE
INGLRDAIVMDNPAELGQITYQDKDGQEHAIGAQPDTNPMLAEARDFATVINDPSNHQTEYLAWRQLSRNVNKLLFNLRQ
SGHLYFTGEAPDTDK

Sequences:

>Translated_335_residues
MLKLGIIGTNWITQQFIDAAAASGEWQLTSVYSRHAETAQAFAAKNHADETFTDLDAFFSRGSFDTVYIASPNSLHFAQA
KQAIAYGKHVIVEKPAVANQQEFEQLDAVLKAHPDVLLFEAARQIHEVNFQRVKDQIKKLSLVQGATLTYMKYSSRYDAV
LAGEEPNIFSLNFAGGALQDLGVYLAYDAVGWFGMPEEVAYYPTLIRTGVDGKGVAILRYADFTVTLNVGKTSDSFLPSE
INGLRDAIVMDNPAELGQITYQDKDGQEHAIGAQPDTNPMLAEARDFATVINDPSNHQTEYLAWRQLSRNVNKLLFNLRQ
SGHLYFTGEAPDTDK
>Mature_335_residues
MLKLGIIGTNWITQQFIDAAAASGEWQLTSVYSRHAETAQAFAAKNHADETFTDLDAFFSRGSFDTVYIASPNSLHFAQA
KQAIAYGKHVIVEKPAVANQQEFEQLDAVLKAHPDVLLFEAARQIHEVNFQRVKDQIKKLSLVQGATLTYMKYSSRYDAV
LAGEEPNIFSLNFAGGALQDLGVYLAYDAVGWFGMPEEVAYYPTLIRTGVDGKGVAILRYADFTVTLNVGKTSDSFLPSE
INGLRDAIVMDNPAELGQITYQDKDGQEHAIGAQPDTNPMLAEARDFATVINDPSNHQTEYLAWRQLSRNVNKLLFNLRQ
SGHLYFTGEAPDTDK

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI145693182, Length=330, Percent_Identity=36.6666666666667, Blast_Score=218, Evalue=3e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 37109; Mature: 37109

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLGIIGTNWITQQFIDAAAASGEWQLTSVYSRHAETAQAFAAKNHADETFTDLDAFFS
CEEEEEECCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
RGSFDTVYIASPNSLHFAQAKQAIAYGKHVIVEKPAVANQQEFEQLDAVLKAHPDVLLFE
CCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEHHH
AARQIHEVNFQRVKDQIKKLSLVQGATLTYMKYSSRYDAVLAGEEPNIFSLNFAGGALQD
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEECCCCCEEEEECCCCCHHH
LGVYLAYDAVGWFGMPEEVAYYPTLIRTGVDGKGVAILRYADFTVTLNVGKTSDSFLPSE
HCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCHH
INGLRDAIVMDNPAELGQITYQDKDGQEHAIGAQPDTNPMLAEARDFATVINDPSNHQTE
HHHHHHEEEECCCHHHCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHH
YLAWRQLSRNVNKLLFNLRQSGHLYFTGEAPDTDK
HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
>Mature Secondary Structure
MLKLGIIGTNWITQQFIDAAAASGEWQLTSVYSRHAETAQAFAAKNHADETFTDLDAFFS
CEEEEEECCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
RGSFDTVYIASPNSLHFAQAKQAIAYGKHVIVEKPAVANQQEFEQLDAVLKAHPDVLLFE
CCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEHHH
AARQIHEVNFQRVKDQIKKLSLVQGATLTYMKYSSRYDAVLAGEEPNIFSLNFAGGALQD
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEECCCCCEEEEECCCCCHHH
LGVYLAYDAVGWFGMPEEVAYYPTLIRTGVDGKGVAILRYADFTVTLNVGKTSDSFLPSE
HCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCHH
INGLRDAIVMDNPAELGQITYQDKDGQEHAIGAQPDTNPMLAEARDFATVINDPSNHQTE
HHHHHHEEEECCCHHHCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHH
YLAWRQLSRNVNKLLFNLRQSGHLYFTGEAPDTDK
HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]