Click here to switch to the map view.

The map label for this gene is cspP

Identifier: 28377937

GI number: 28377937

Start: 1058875

End: 1059075

Strand: Direct

Name: cspP

Synonym: lp_1160

Alternate gene names: 28377937

Gene position: 1058875-1059075 (Clockwise)

Preceding gene: 28377935

Following gene: 28377938

Centisome position: 32.01

GC content: 39.8

Gene sequence:

>201_bases
ATGAAAAATGGTACTGTAAAATGGTTCAATGCTGATAAGGGTTATGGCTTTATTACTGGTGAAGATGGCAACGATGTATT
CGTTCACTTCTCAGCTATCCAAACTGACGGTTTCAAGACCTTAGAAGAAGGCCAAAAAGTTACTTTTGATGAAGAATCAA
GCGATCGTGGCCCACAAGCTGCTAACGTTGTTCCTCAATAA

Upstream 100 bases:

>100_bases
TTTTAAAGTATCATTTAATTGTGTTACCGTAAATTCTTTATAGGTGTTAATAACATGTGTTAGTTACTTTTTATTTTTAT
ATCCTAGGAGGATTTAGTTC

Downstream 100 bases:

>100_bases
GCTTAGCTTTTAAAAGGGCTGCCCGTGTGGCGGCTCTTTTTTTATGCGCAAAATAGACTGGGACTTTTAATCCTTCTGGC
CCAACTTAGCGGCGAAAACT

Product: cold shock protein CspP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 66

Protein sequence:

>66_residues
MKNGTVKWFNADKGYGFITGEDGNDVFVHFSAIQTDGFKTLEEGQKVTFDEESSDRGPQAANVVPQ

Sequences:

>Translated_66_residues
MKNGTVKWFNADKGYGFITGEDGNDVFVHFSAIQTDGFKTLEEGQKVTFDEESSDRGPQAANVVPQ
>Mature_66_residues
MKNGTVKWFNADKGYGFITGEDGNDVFVHFSAIQTDGFKTLEEGQKVTFDEESSDRGPQAANVVPQ

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain

Homologues:

Organism=Escherichia coli, GI1789979, Length=61, Percent_Identity=70.4918032786885, Blast_Score=88, Evalue=9e-20,
Organism=Escherichia coli, GI1787839, Length=62, Percent_Identity=69.3548387096774, Blast_Score=87, Evalue=2e-19,
Organism=Escherichia coli, GI1786841, Length=62, Percent_Identity=67.741935483871, Blast_Score=86, Evalue=3e-19,
Organism=Escherichia coli, GI2367114, Length=62, Percent_Identity=67.741935483871, Blast_Score=85, Evalue=9e-19,
Organism=Escherichia coli, GI1788126, Length=61, Percent_Identity=63.9344262295082, Blast_Score=77, Evalue=2e-16,
Organism=Escherichia coli, GI1787834, Length=62, Percent_Identity=61.2903225806452, Blast_Score=76, Evalue=4e-16,
Organism=Escherichia coli, GI1787107, Length=66, Percent_Identity=51.5151515151515, Blast_Score=73, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSP1_LACPL (P71478)

Other databases:

- EMBL:   Y08760
- EMBL:   AL935255
- RefSeq:   NP_784829.1
- ProteinModelPortal:   P71478
- SMR:   P71478
- GeneID:   1063203
- GenomeReviews:   AL935263_GR
- KEGG:   lpl:lp_1160
- HOGENOM:   HBG717773
- OMA:   FIEHPGN
- ProtClustDB:   CLSK272208
- BioCyc:   LPLA220668:LP_1160-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027
- Gene3D:   G3DSA:2.40.50.140
- PIRSF:   PIRSF002599
- PRINTS:   PR00050
- SMART:   SM00357

Pfam domain/function: PF00313 CSD; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 7257; Mature: 7257

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNGTVKWFNADKGYGFITGEDGNDVFVHFSAIQTDGFKTLEEGQKVTFDEESSDRGPQA
CCCCCEEEEECCCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCC
ANVVPQ
CCCCCC
>Mature Secondary Structure
MKNGTVKWFNADKGYGFITGEDGNDVFVHFSAIQTDGFKTLEEGQKVTFDEESSDRGPQA
CCCCCEEEEECCCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCC
ANVVPQ
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9139925; 12566566