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The map label for this gene is ytrB [H]

Identifier: 28377247

GI number: 28377247

Start: 298172

End: 299065

Strand: Direct

Name: ytrB [H]

Synonym: lp_0326

Alternate gene names: 28377247

Gene position: 298172-299065 (Clockwise)

Preceding gene: 28377246

Following gene: 28377248

Centisome position: 9.01

GC content: 42.73

Gene sequence:

>894_bases
ATGAGTTTAGTGATTAATCAGTTAAGTAAGCGCATTGACCATCACCAGACGTTAGATGGCATTAGTTTTGAGATTGGACT
TGGTCAAATCGTCGGTGTTGTTGGCCGTAACGGGGTTGGGAAAACAACCCTTTTTCGGACAATCAATGGGCAGTACCTCA
CGGATCATGGTCAGGTCCTGGTTGATGGGCAAGAGGTTGTTGATCAACCGGAAATGCGGACGCAACTGTGTTTTATTGAT
CCACTGGCAAATTTTTTTAAAGGCGCGACGATTGCGCAAATCCAGTGGTATTATCAAGCTGCTTACCCGGACTTTGATAA
TGCCAAATTTGCGCAATTGTTAGACCGTTATCATCTGACGTCCAAACAAAAATTACGCCATTTCTCTAAGGGAATGTTTG
GTTTGTTTACAATCATTCTCAGTGTTGCGACGCAAGCGCCGTATCTCTTTTTGGATGAGCCGCTAGATGGTTTGGATGTC
CTAATTCGAAAAAACATTCTTGGTATTCTAATTGATGAAGTGGCTACGGGAAACCGTTCAATCGTGATTGCGTCACATAA
TTTGGCTGAATTAGAGGGGGTTATTGACCGCGCGTTGATGCTTAAACACGGTCGCATTGTCAATGACTATCAATTAGAAG
CCATGCGACGAAGTGCACGAAAAGTTCAATTAGTGTATCGTGACAAGCAGATTCCAGCCGTTGTTAAACAATTAGGCCAT
ATTGTACACGTTTCTGGTCGGGTTATCGTGGTAGTGTTTGAAGATTATAATGCTGAGGTCCAGGCGCAATTAGCGACAAC
TAACCCGGTATTTCAAGAAGATTTACCACTCTCATTAGCAGACTTGTTTATGGCTAATCTGACGGATGAAGCTGACTTTG
AATTATTATCTTAG

Upstream 100 bases:

>100_bases
AATTACGGGAACAGTTTACACAAATTGTCAGGCTAGCGGGTCAAAGAGGCGTCAGTATTGCTGAATTGCATGGCTGGCTT
GATCAAATGGGGGAAAAATA

Downstream 100 bases:

>100_bases
GGGGACGATAAAATGACGAAACGAAAGTTATGGCAGTTGTTATGGCGCCACTATCGCACGTTGTTATTAACGGCGGGCGG
TGTCTTACTACTAGTAGGCA

Product: ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MSLVINQLSKRIDHHQTLDGISFEIGLGQIVGVVGRNGVGKTTLFRTINGQYLTDHGQVLVDGQEVVDQPEMRTQLCFID
PLANFFKGATIAQIQWYYQAAYPDFDNAKFAQLLDRYHLTSKQKLRHFSKGMFGLFTIILSVATQAPYLFLDEPLDGLDV
LIRKNILGILIDEVATGNRSIVIASHNLAELEGVIDRALMLKHGRIVNDYQLEAMRRSARKVQLVYRDKQIPAVVKQLGH
IVHVSGRVIVVVFEDYNAEVQAQLATTNPVFQEDLPLSLADLFMANLTDEADFELLS

Sequences:

>Translated_297_residues
MSLVINQLSKRIDHHQTLDGISFEIGLGQIVGVVGRNGVGKTTLFRTINGQYLTDHGQVLVDGQEVVDQPEMRTQLCFID
PLANFFKGATIAQIQWYYQAAYPDFDNAKFAQLLDRYHLTSKQKLRHFSKGMFGLFTIILSVATQAPYLFLDEPLDGLDV
LIRKNILGILIDEVATGNRSIVIASHNLAELEGVIDRALMLKHGRIVNDYQLEAMRRSARKVQLVYRDKQIPAVVKQLGH
IVHVSGRVIVVVFEDYNAEVQAQLATTNPVFQEDLPLSLADLFMANLTDEADFELLS
>Mature_296_residues
SLVINQLSKRIDHHQTLDGISFEIGLGQIVGVVGRNGVGKTTLFRTINGQYLTDHGQVLVDGQEVVDQPEMRTQLCFIDP
LANFFKGATIAQIQWYYQAAYPDFDNAKFAQLLDRYHLTSKQKLRHFSKGMFGLFTIILSVATQAPYLFLDEPLDGLDVL
IRKNILGILIDEVATGNRSIVIASHNLAELEGVIDRALMLKHGRIVNDYQLEAMRRSARKVQLVYRDKQIPAVVKQLGHI
VHVSGRVIVVVFEDYNAEVQAQLATTNPVFQEDLPLSLADLFMANLTDEADFELLS

Specific function: Part of the ABC transporter complex YtrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI47078218, Length=204, Percent_Identity=25, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI45446740, Length=204, Percent_Identity=25, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI150417984, Length=215, Percent_Identity=26.9767441860465, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI21536376, Length=197, Percent_Identity=24.8730964467005, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1787758, Length=210, Percent_Identity=26.1904761904762, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1789586, Length=219, Percent_Identity=26.9406392694064, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788225, Length=238, Percent_Identity=25.2100840336134, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786319, Length=209, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87081782, Length=208, Percent_Identity=23.0769230769231, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1786398, Length=263, Percent_Identity=24.7148288973384, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87081791, Length=210, Percent_Identity=24.7619047619048, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787029, Length=221, Percent_Identity=25.7918552036199, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1789962, Length=219, Percent_Identity=24.6575342465753, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1786872, Length=224, Percent_Identity=24.5535714285714, Blast_Score=61, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI71983523, Length=199, Percent_Identity=25.1256281407035, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71983510, Length=199, Percent_Identity=25.1256281407035, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71983516, Length=199, Percent_Identity=25.1256281407035, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28574150, Length=228, Percent_Identity=25.4385964912281, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI116007328, Length=229, Percent_Identity=26.2008733624454, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24666092, Length=215, Percent_Identity=29.7674418604651, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI116007184, Length=196, Percent_Identity=25, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI221500365, Length=196, Percent_Identity=25, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI28573573, Length=212, Percent_Identity=25.4716981132075, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI28573571, Length=212, Percent_Identity=25.4716981132075, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 33337; Mature: 33206

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLVINQLSKRIDHHQTLDGISFEIGLGQIVGVVGRNGVGKTTLFRTINGQYLTDHGQVL
CCHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCCCCHHEEEECCCCEEECCCEEE
VDGQEVVDQPEMRTQLCFIDPLANFFKGATIAQIQWYYQAAYPDFDNAKFAQLLDRYHLT
ECCHHHHCCCCHHHHEEEHHHHHHHHCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHCC
SKQKLRHFSKGMFGLFTIILSVATQAPYLFLDEPLDGLDVLIRKNILGILIDEVATGNRS
HHHHHHHHHCCHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCE
IVIASHNLAELEGVIDRALMLKHGRIVNDYQLEAMRRSARKVQLVYRDKQIPAVVKQLGH
EEEEECCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEEEEEECCCCHHHHHHHCC
IVHVSGRVIVVVFEDYNAEVQAQLATTNPVFQEDLPLSLADLFMANLTDEADFELLS
EEEECCCEEEEEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCEECC
>Mature Secondary Structure 
SLVINQLSKRIDHHQTLDGISFEIGLGQIVGVVGRNGVGKTTLFRTINGQYLTDHGQVL
CHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCCCCHHEEEECCCCEEECCCEEE
VDGQEVVDQPEMRTQLCFIDPLANFFKGATIAQIQWYYQAAYPDFDNAKFAQLLDRYHLT
ECCHHHHCCCCHHHHEEEHHHHHHHHCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHCC
SKQKLRHFSKGMFGLFTIILSVATQAPYLFLDEPLDGLDVLIRKNILGILIDEVATGNRS
HHHHHHHHHCCHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCE
IVIASHNLAELEGVIDRALMLKHGRIVNDYQLEAMRRSARKVQLVYRDKQIPAVVKQLGH
EEEEECCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEEEEEECCCCHHHHHHHCC
IVHVSGRVIVVVFEDYNAEVQAQLATTNPVFQEDLPLSLADLFMANLTDEADFELLS
EEEECCCEEEEEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]