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The map label for this gene is ytrA [H]

Identifier: 28377246

GI number: 28377246

Start: 297819

End: 298172

Strand: Direct

Name: ytrA [H]

Synonym: lp_0325

Alternate gene names: 28377246

Gene position: 297819-298172 (Clockwise)

Preceding gene: 28377245

Following gene: 28377247

Centisome position: 9.0

GC content: 45.76

Gene sequence:

>354_bases
ATGCAAATTGATCATGGAAGCCGACAACCGTATTACGCTCAGATAGTAACCGGTATTGAACAAGATATTGCTCATGGTGT
GTTACAAAGTGGTGAACAACTGCCGTCGGTGCGTGAAATGGCTCGTCAACACTTGCTGAATCCGAATACGGTCAGTAAAG
CCTATAAGCGACTGGAGACACAGCAAATTATCGAGACGGTTCCGGGAAAAGGCACGTACGTTAAAGTGGTGGATTCAACG
CTGTTCCGACAAGAATTACGGGAACAGTTTACACAAATTGTCAGGCTAGCGGGTCAAAGAGGCGTCAGTATTGCTGAATT
GCATGGCTGGCTTGATCAAATGGGGGAAAAATAA

Upstream 100 bases:

>100_bases
TGGCCTGATTTTAACGTTTTCTTAGCTTGTTTATAACTGTACTATACTGTACCATTTAACGTAAGCGAAGTAACGACTGT
GTATTAAATGGAGGTGGGCC

Downstream 100 bases:

>100_bases
TGAGTTTAGTGATTAATCAGTTAAGTAAGCGCATTGACCATCACCAGACGTTAGATGGCATTAGTTTTGAGATTGGACTT
GGTCAAATCGTCGGTGTTGT

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MQIDHGSRQPYYAQIVTGIEQDIAHGVLQSGEQLPSVREMARQHLLNPNTVSKAYKRLETQQIIETVPGKGTYVKVVDST
LFRQELREQFTQIVRLAGQRGVSIAELHGWLDQMGEK

Sequences:

>Translated_117_residues
MQIDHGSRQPYYAQIVTGIEQDIAHGVLQSGEQLPSVREMARQHLLNPNTVSKAYKRLETQQIIETVPGKGTYVKVVDST
LFRQELREQFTQIVRLAGQRGVSIAELHGWLDQMGEK
>Mature_117_residues
MQIDHGSRQPYYAQIVTGIEQDIAHGVLQSGEQLPSVREMARQHLLNPNTVSKAYKRLETQQIIETVPGKGTYVKVVDST
LFRQELREQFTQIVRLAGQRGVSIAELHGWLDQMGEK

Specific function: Negatively regulates ABC transporter complex ytrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 13272; Mature: 13272

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIDHGSRQPYYAQIVTGIEQDIAHGVLQSGEQLPSVREMARQHLLNPNTVSKAYKRLET
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
QQIIETVPGKGTYVKVVDSTLFRQELREQFTQIVRLAGQRGVSIAELHGWLDQMGEK
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQIDHGSRQPYYAQIVTGIEQDIAHGVLQSGEQLPSVREMARQHLLNPNTVSKAYKRLET
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
QQIIETVPGKGTYVKVVDSTLFRQELREQFTQIVRLAGQRGVSIAELHGWLDQMGEK
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]