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The map label for this gene is 28377013

Identifier: 28377013

GI number: 28377013

Start: 48877

End: 49509

Strand: Direct

Name: 28377013

Synonym: lp_0048

Alternate gene names: NA

Gene position: 48877-49509 (Clockwise)

Preceding gene: 28377012

Following gene: 28377014

Centisome position: 1.48

GC content: 45.5

Gene sequence:

>633_bases
ATGGGAAAAGTATCGTCACTAAAACTAAAAACGAATCGCAGGTGCATCTATATCACAACAATCAAAGAAATTACTGAAGC
TATCAAGGCTGATCCCGATAACGCTGAATATACGGCGAAGGGGTGGGACCCATTATTTCATGTGTTACCGACAGCCACTA
TTTTAGTGATTAGTCAGGCACCGGGACGTATTGCCCAAAATACCAAGACGTATTTCAATGATGCGAGCGGGGACCGACTT
CGGGATTGGATGGGCGTGACGCGGGAGCAATTCTATCAAAGTGACCGCATTGCAGTTATGCCACTAGATTTCTACTATCC
TGGTAAGGGCAAAAGCGGTGACTTGCCACCGCGCAAGGGCTTCATGGATAAATGGCATGAACCGCTGCTAGCAATGATGC
CTAACGTTCAACTGACGTTACTTGTGGGCCAATATGCAATTAAGGCTTATTTAGGACGTTCACGGCAAAAGACGTTGACT
GCAACGGTTCAAAATTATCAGGATTACTTGCCTGATTATTTCCCATTAGTGCATCCATCGCCCCTAAATTATGGCTGGCA
AAAGAAGAATCCATGGTTCCAAGCGACCGTGGTGCCAGATCTTCAACGACGGGTACAGATTGCATTAAAATAA

Upstream 100 bases:

>100_bases
AAATTGAATAAGACAAAGTAGCACTGGTCATTGGAGATTATGAAGTAATTATAAAAGATGATACTCAGATTGAATATATT
CTGAGCTTAATCAAACAGGC

Downstream 100 bases:

>100_bases
GGTCTACGACAGCCTTGTTAAGGCCAGTGTTCATAGCTTGTTGACTGTAACTTCAAGGGCCTGATTTGGTTAAAAACGTG
GTAATACTGAGCATGAATGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MGKVSSLKLKTNRRCIYITTIKEITEAIKADPDNAEYTAKGWDPLFHVLPTATILVISQAPGRIAQNTKTYFNDASGDRL
RDWMGVTREQFYQSDRIAVMPLDFYYPGKGKSGDLPPRKGFMDKWHEPLLAMMPNVQLTLLVGQYAIKAYLGRSRQKTLT
ATVQNYQDYLPDYFPLVHPSPLNYGWQKKNPWFQATVVPDLQRRVQIALK

Sequences:

>Translated_210_residues
MGKVSSLKLKTNRRCIYITTIKEITEAIKADPDNAEYTAKGWDPLFHVLPTATILVISQAPGRIAQNTKTYFNDASGDRL
RDWMGVTREQFYQSDRIAVMPLDFYYPGKGKSGDLPPRKGFMDKWHEPLLAMMPNVQLTLLVGQYAIKAYLGRSRQKTLT
ATVQNYQDYLPDYFPLVHPSPLNYGWQKKNPWFQATVVPDLQRRVQIALK
>Mature_209_residues
GKVSSLKLKTNRRCIYITTIKEITEAIKADPDNAEYTAKGWDPLFHVLPTATILVISQAPGRIAQNTKTYFNDASGDRLR
DWMGVTREQFYQSDRIAVMPLDFYYPGKGKSGDLPPRKGFMDKWHEPLLAMMPNVQLTLLVGQYAIKAYLGRSRQKTLTA
TVQNYQDYLPDYFPLVHPSPLNYGWQKKNPWFQATVVPDLQRRVQIALK

Specific function: Unknown

COG id: COG1573

COG function: function code L; Uracil-DNA glycosylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005122 [H]

Pfam domain/function: PF03167 UDG [H]

EC number: NA

Molecular weight: Translated: 24100; Mature: 23969

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKVSSLKLKTNRRCIYITTIKEITEAIKADPDNAEYTAKGWDPLFHVLPTATILVISQA
CCCCCCEEEECCCEEEEEEEHHHHHHHHHCCCCCCEEEECCCCHHHHHHCCEEEEEEECC
PGRIAQNTKTYFNDASGDRLRDWMGVTREQFYQSDRIAVMPLDFYYPGKGKSGDLPPRKG
CCCHHHCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCC
FMDKWHEPLLAMMPNVQLTLLVGQYAIKAYLGRSRQKTLTATVQNYQDYLPDYFPLVHPS
HHHHHHCCHHHHCCCCEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
PLNYGWQKKNPWFQATVVPDLQRRVQIALK
CCCCCCCCCCCCEEEEECHHHHHHEEEECC
>Mature Secondary Structure 
GKVSSLKLKTNRRCIYITTIKEITEAIKADPDNAEYTAKGWDPLFHVLPTATILVISQA
CCCCCEEEECCCEEEEEEEHHHHHHHHHCCCCCCEEEECCCCHHHHHHCCEEEEEEECC
PGRIAQNTKTYFNDASGDRLRDWMGVTREQFYQSDRIAVMPLDFYYPGKGKSGDLPPRKG
CCCHHHCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCC
FMDKWHEPLLAMMPNVQLTLLVGQYAIKAYLGRSRQKTLTATVQNYQDYLPDYFPLVHPS
HHHHHHCCHHHHCCCCEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
PLNYGWQKKNPWFQATVVPDLQRRVQIALK
CCCCCCCCCCCCEEEEECHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]