Click here to switch to the map view.

The map label for this gene is ykrA [H]

Identifier: 28376998

GI number: 28376998

Start: 31317

End: 32084

Strand: Direct

Name: ykrA [H]

Synonym: lp_0026

Alternate gene names: 28376998

Gene position: 31317-32084 (Clockwise)

Preceding gene: 28376997

Following gene: 28377002

Centisome position: 0.95

GC content: 47.53

Gene sequence:

>768_bases
TTGTACCAAGCAGTAGTGTTTTTTGATTTGGATGGAACGTTAATGCAGGACGATAAGACGGTTGCGGCCAGCAGTGTGCG
GGCAATCCAGCAATTACGAGCTAACCACGTCCTACCCGTCATTGCCACGGGTCGCAATGTATTCGAAGTTCAAGATGTGA
TGACAACGACGGGGATCGATTCAATCGTCAGTGCGAATGGGAGTTACGTCGCGTATCAAGGGCAGTTTTTGAGTGCGCAC
GAACTGGATAAGGAGCTTTTGACCGATATTACTCATTTTGCCAATCGCCAACAGAATGCGCTAGCTTATTATAATAACGC
CGGTTTTGCGTTAAGCCATCGTGATGCATTGACAACCAGTAATTATCGGGCACTCAGACAGACGGCCCGGGTCGCACCGC
ACTTTTATGAACATCAACATATTAATTTCTTACTGACGTTTGATCCGTTGAATGCGGCGCAATATCGGCAGCGATATCGA
GGCCGACTACATTTTGTTCGTAATAATCCGCGTGCGCTGGACACTATGCAATGGGGTGTCTCCAAGGCGGTTGGAATTCA
GGATATCTTAACCAAGGCGCATTTAACTAAGGTACCGACCTATGCGTTTGGTGATCAATTAAATGATATTGAGATGTTCC
GAATGATCCAGACACCGATTGCAATGGGCAATGGTCATCCGCAGGTCAAACAACTCGCGCGGTACGTGACCGCTGACAAC
ATGCACGGCGGGATTGCCCAAGGATTGCAACATTTTGATTTGATTTGA

Upstream 100 bases:

>100_bases
ACCTTTTCGGATGGTTTTAAATAGACGTCATCACGAAGGTAATTAGTGTATTGGTGGCGCTGGTTATTGGCCAGTGACTG
ATTAATTAGGGGGTAATTGG

Downstream 100 bases:

>100_bases
GAATTGACAGCTAGTCTGATAATTATAAGCTTCCAGTGAGCAGTCCAACTGGTGAGATTAGCGACTGGCTTAAACAAAAC
AAACCGGATTTGGTAACCAT

Product: HAD superfamily hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MYQAVVFFDLDGTLMQDDKTVAASSVRAIQQLRANHVLPVIATGRNVFEVQDVMTTTGIDSIVSANGSYVAYQGQFLSAH
ELDKELLTDITHFANRQQNALAYYNNAGFALSHRDALTTSNYRALRQTARVAPHFYEHQHINFLLTFDPLNAAQYRQRYR
GRLHFVRNNPRALDTMQWGVSKAVGIQDILTKAHLTKVPTYAFGDQLNDIEMFRMIQTPIAMGNGHPQVKQLARYVTADN
MHGGIAQGLQHFDLI

Sequences:

>Translated_255_residues
MYQAVVFFDLDGTLMQDDKTVAASSVRAIQQLRANHVLPVIATGRNVFEVQDVMTTTGIDSIVSANGSYVAYQGQFLSAH
ELDKELLTDITHFANRQQNALAYYNNAGFALSHRDALTTSNYRALRQTARVAPHFYEHQHINFLLTFDPLNAAQYRQRYR
GRLHFVRNNPRALDTMQWGVSKAVGIQDILTKAHLTKVPTYAFGDQLNDIEMFRMIQTPIAMGNGHPQVKQLARYVTADN
MHGGIAQGLQHFDLI
>Mature_255_residues
MYQAVVFFDLDGTLMQDDKTVAASSVRAIQQLRANHVLPVIATGRNVFEVQDVMTTTGIDSIVSANGSYVAYQGQFLSAH
ELDKELLTDITHFANRQQNALAYYNNAGFALSHRDALTTSNYRALRQTARVAPHFYEHQHINFLLTFDPLNAAQYRQRYR
GRLHFVRNNPRALDTMQWGVSKAVGIQDILTKAHLTKVPTYAFGDQLNDIEMFRMIQTPIAMGNGHPQVKQLARYVTADN
MHGGIAQGLQHFDLI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. Cof family [H]

Homologues:

Organism=Escherichia coli, GI48994981, Length=243, Percent_Identity=28.8065843621399, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787043, Length=268, Percent_Identity=27.6119402985075, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI2367265, Length=272, Percent_Identity=23.1617647058824, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006379
- InterPro:   IPR000150 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 28753; Mature: 28753

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYQAVVFFDLDGTLMQDDKTVAASSVRAIQQLRANHVLPVIATGRNVFEVQDVMTTTGID
CCEEEEEEECCCCEECCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCHH
SIVSANGSYVAYQGQFLSAHELDKELLTDITHFANRQQNALAYYNNAGFALSHRDALTTS
HHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEECCCHHCCH
NYRALRQTARVAPHFYEHQHINFLLTFDPLNAAQYRQRYRGRLHFVRNNPRALDTMQWGV
HHHHHHHHHHHCCHHHCCCCEEEEEEECCCCHHHHHHHHCCEEEEEECCCCHHHHHHHHH
SKAVGIQDILTKAHLTKVPTYAFGDQLNDIEMFRMIQTPIAMGNGHPQVKQLARYVTADN
HHHCCHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
MHGGIAQGLQHFDLI
CCCHHHHHHHHHCCC
>Mature Secondary Structure
MYQAVVFFDLDGTLMQDDKTVAASSVRAIQQLRANHVLPVIATGRNVFEVQDVMTTTGID
CCEEEEEEECCCCEECCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCHH
SIVSANGSYVAYQGQFLSAHELDKELLTDITHFANRQQNALAYYNNAGFALSHRDALTTS
HHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEECCCHHCCH
NYRALRQTARVAPHFYEHQHINFLLTFDPLNAAQYRQRYRGRLHFVRNNPRALDTMQWGV
HHHHHHHHHHHCCHHHCCCCEEEEEEECCCCHHHHHHHHCCEEEEEECCCCHHHHHHHHH
SKAVGIQDILTKAHLTKVPTYAFGDQLNDIEMFRMIQTPIAMGNGHPQVKQLARYVTADN
HHHCCHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
MHGGIAQGLQHFDLI
CCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]