Click here to switch to the map view.

The map label for this gene is yybT [H]

Identifier: 28376984

GI number: 28376984

Start: 11254

End: 13266

Strand: Direct

Name: yybT [H]

Synonym: lp_0012

Alternate gene names: 28376984

Gene position: 11254-13266 (Clockwise)

Preceding gene: 28376983

Following gene: 28376985

Centisome position: 0.34

GC content: 44.36

Gene sequence:

>2013_bases
ATGAAAAAGATCTTTTCGCGTGAAAAAATTCCATTTTTCCTACAAAATCAGCAGTTACGACTCTTAGCGTTGGTTATTTT
TAGCTTGTCGTTAATTATGCTCGTCACTGGTTATTTAATGAACTGGATTTTTGGGACCGTTGTCCTCATCTTGATTGTGA
TGGCTGTGGTGATATCTTATAATACGTTGATTGAGCTCAGTTCGAGTGCAAATGAATATATCTCAGACTTGTCGTATCGT
ATTAAGCGCGGCGAACAAGAGGCACTGATTCAGATGCCTATCGGAGTAATGATTTTTAATTCCGACCAGACCATCGAATG
GATCAATCCTTATCTTCAGCGCTATTTCGGTGATAAGGACGTCTTAGGATACCGCTTGGAAGATATTGAGCCAACACTGG
CAGCGACGCTGAACGCTCATCTGGACGAGCCCGCGACGATTCGTTGGCAAGACTACCAGTTTGATGTACGTGTCCAGCAG
AGCACTAATACGGTCTATATGATGGATGTGACCAAGTATGCTGAGCTGACGGATCAATTCGAAGATGAAAAACTCGTGAT
TGGACAAATCTTTTTGGATAATTACGATGAAATCACCCAGTCGATGACTGATACGGATATTTCCAACCTGAACAATTACG
TGACCAATGAATTGTCTAAGTGGACCCAGATGTTTGGGATGTACCTGAAGCGCTTGGATGATGATCACTTCTTCTTGTTG
GGCTATGCTAGTAGTTTACGACGTGTTGAAGAGAATAAGTTTCGCATTTTAGATCGAATTCGGGAGTCGACTTCTAAGCA
AAATTTCCCACTAACATTGAGTATTGGGATTGCTTATGGTGAACGGAACATGAACAATTTGGCCGATTTAGCGCAGAGTA
ACATGGACCTTGCCTTGGGGCGGGGTGGTGACCAAGTTGTGGTGAAGTCTGAGGACGAACCTGCTCGTTTCTACGGTGGT
AAAACCAACCCGATGGAAAAACGGACGCGGGTACGGGCCCGGATGATCAGTCAGACGTTACAAGAGTTAATGAATCAATC
TGACCAGATCTTTGTTCAGGGGCACCGCCAACCAGATATGGATGCCGTTGGGGCCTGTCTCGGGATTCGCCGAATTGCTG
AAATGAATGGTAAACAGTGTTGGATCGTCTTGGATGAGCAAAATGTGCATTCAGACATTCAGCGTTTACTGGACCAGTTG
AAGTCTGATGAGAACATCGAGTCAGCGATTATCTCGCCGGAAGAAGCACTTGAGAAGGCCACTGACCAAAGTTTATTGAT
TATGGCTGACCATTCTAAGCCAAGTATTTCAATGTCACAGGCCCTTTATGAGCGGCTCGAAAATCGCGTTATGATTATTG
ATCACCATCGACGGGGCGAAGAATTTCCAGAAAACCCAGTTTTGGTTTATATTGAACCGTATGCTTCGTCGACTTGTGAG
CTGATTACCGAGATGTTTGAATATCAATCGCACGATGCCGAACCAATCAATAAGATTGAGGCAACCGCAATGTTGACCGG
AATCGTTATCGATACGAAGTCGTTTTCATTACGATCAGGATCGCGGACGTTTGATGCTGCTAGTTATCTACGATCAGCCG
GTGCGGACTCGTTACTCGTTCAACAATTTATGAAGGAGAACGTTGATAGTTATCTACAACGCAATCATCTGATTGAAACC
GTTGAATTTGTTAACCAGGATATGGCATTATGTGTTGGTGAAGATGATCAGGTCTATGACCCAGTAACGGCGGCTCAAGC
TGCTGATTCACTATTATCTATGTCTGGTGTCGACGCATCATTCGTGATTACACGTCGTGAAGATGGACGGGTCGGAATTT
CGGCACGATCACTTGGCGAGATCAACGTACAAGTTTATATGGAAAAATTGGGTGGTGGCGGTCATTTATCGAATGCTGCA
ACCCAGATTGAAGGGCAGTCAGTTGAAGCCGTCAAACAATCGTTGATTGATTTGTTAACGGCAACTGATGAGCCGACCAC
AGAATCTAATTAG

Upstream 100 bases:

>100_bases
TTCAATGAAGCGTTTACGGTGATTGACACGAAACGCTGAAGCGGACGGTGGTTTGTGATAAAATATAGTCATTACTGAGA
AGGCTTGAGGGATTTTTAAT

Downstream 100 bases:

>100_bases
GAGTGAGTCTAAATGCAAGTTATTTTTTTGAATGATGTCCGTGGTAAGGGCAAGCGGGGCCAAATCAAGAATGTCCCGGA
TGGTTACGCGCAGAACTTTT

Product: exopolyphosphatase-related protein (putative)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 670; Mature: 670

Protein sequence:

>670_residues
MKKIFSREKIPFFLQNQQLRLLALVIFSLSLIMLVTGYLMNWIFGTVVLILIVMAVVISYNTLIELSSSANEYISDLSYR
IKRGEQEALIQMPIGVMIFNSDQTIEWINPYLQRYFGDKDVLGYRLEDIEPTLAATLNAHLDEPATIRWQDYQFDVRVQQ
STNTVYMMDVTKYAELTDQFEDEKLVIGQIFLDNYDEITQSMTDTDISNLNNYVTNELSKWTQMFGMYLKRLDDDHFFLL
GYASSLRRVEENKFRILDRIRESTSKQNFPLTLSIGIAYGERNMNNLADLAQSNMDLALGRGGDQVVVKSEDEPARFYGG
KTNPMEKRTRVRARMISQTLQELMNQSDQIFVQGHRQPDMDAVGACLGIRRIAEMNGKQCWIVLDEQNVHSDIQRLLDQL
KSDENIESAIISPEEALEKATDQSLLIMADHSKPSISMSQALYERLENRVMIIDHHRRGEEFPENPVLVYIEPYASSTCE
LITEMFEYQSHDAEPINKIEATAMLTGIVIDTKSFSLRSGSRTFDAASYLRSAGADSLLVQQFMKENVDSYLQRNHLIET
VEFVNQDMALCVGEDDQVYDPVTAAQAADSLLSMSGVDASFVITRREDGRVGISARSLGEINVQVYMEKLGGGGHLSNAA
TQIEGQSVEAVKQSLIDLLTATDEPTTESN

Sequences:

>Translated_670_residues
MKKIFSREKIPFFLQNQQLRLLALVIFSLSLIMLVTGYLMNWIFGTVVLILIVMAVVISYNTLIELSSSANEYISDLSYR
IKRGEQEALIQMPIGVMIFNSDQTIEWINPYLQRYFGDKDVLGYRLEDIEPTLAATLNAHLDEPATIRWQDYQFDVRVQQ
STNTVYMMDVTKYAELTDQFEDEKLVIGQIFLDNYDEITQSMTDTDISNLNNYVTNELSKWTQMFGMYLKRLDDDHFFLL
GYASSLRRVEENKFRILDRIRESTSKQNFPLTLSIGIAYGERNMNNLADLAQSNMDLALGRGGDQVVVKSEDEPARFYGG
KTNPMEKRTRVRARMISQTLQELMNQSDQIFVQGHRQPDMDAVGACLGIRRIAEMNGKQCWIVLDEQNVHSDIQRLLDQL
KSDENIESAIISPEEALEKATDQSLLIMADHSKPSISMSQALYERLENRVMIIDHHRRGEEFPENPVLVYIEPYASSTCE
LITEMFEYQSHDAEPINKIEATAMLTGIVIDTKSFSLRSGSRTFDAASYLRSAGADSLLVQQFMKENVDSYLQRNHLIET
VEFVNQDMALCVGEDDQVYDPVTAAQAADSLLSMSGVDASFVITRREDGRVGISARSLGEINVQVYMEKLGGGGHLSNAA
TQIEGQSVEAVKQSLIDLLTATDEPTTESN
>Mature_670_residues
MKKIFSREKIPFFLQNQQLRLLALVIFSLSLIMLVTGYLMNWIFGTVVLILIVMAVVISYNTLIELSSSANEYISDLSYR
IKRGEQEALIQMPIGVMIFNSDQTIEWINPYLQRYFGDKDVLGYRLEDIEPTLAATLNAHLDEPATIRWQDYQFDVRVQQ
STNTVYMMDVTKYAELTDQFEDEKLVIGQIFLDNYDEITQSMTDTDISNLNNYVTNELSKWTQMFGMYLKRLDDDHFFLL
GYASSLRRVEENKFRILDRIRESTSKQNFPLTLSIGIAYGERNMNNLADLAQSNMDLALGRGGDQVVVKSEDEPARFYGG
KTNPMEKRTRVRARMISQTLQELMNQSDQIFVQGHRQPDMDAVGACLGIRRIAEMNGKQCWIVLDEQNVHSDIQRLLDQL
KSDENIESAIISPEEALEKATDQSLLIMADHSKPSISMSQALYERLENRVMIIDHHRRGEEFPENPVLVYIEPYASSTCE
LITEMFEYQSHDAEPINKIEATAMLTGIVIDTKSFSLRSGSRTFDAASYLRSAGADSLLVQQFMKENVDSYLQRNHLIET
VEFVNQDMALCVGEDDQVYDPVTAAQAADSLLSMSGVDASFVITRREDGRVGISARSLGEINVQVYMEKLGGGGHLSNAA
TQIEGQSVEAVKQSLIDLLTATDEPTTESN

Specific function: Unknown

COG id: COG3887

COG function: function code T; Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000160
- InterPro:   IPR003156
- InterPro:   IPR001667
- InterPro:   IPR014528 [H]

Pfam domain/function: PF01368 DHH; PF02272 DHHA1 [H]

EC number: NA

Molecular weight: Translated: 75996; Mature: 75996

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: PS50887 GGDEF ; PS00211 ABC_TRANSPORTER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIFSREKIPFFLQNQQLRLLALVIFSLSLIMLVTGYLMNWIFGTVVLILIVMAVVISY
CCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NTLIELSSSANEYISDLSYRIKRGEQEALIQMPIGVMIFNSDQTIEWINPYLQRYFGDKD
HHHEEECCCHHHHHHHHHHHHHCCCHHHHEECCCEEEEECCCCCHHHHHHHHHHHCCCCC
VLGYRLEDIEPTLAATLNAHLDEPATIRWQDYQFDVRVQQSTNTVYMMDVTKYAELTDQF
CCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCEEEEEEECCCCEEEEEEHHHHHHHHHCC
EDEKLVIGQIFLDNYDEITQSMTDTDISNLNNYVTNELSKWTQMFGMYLKRLDDDHFFLL
CCCEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
GYASSLRRVEENKFRILDRIRESTSKQNFPLTLSIGIAYGERNMNNLADLAQSNMDLALG
EHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHCCCCEEEC
RGGDQVVVKSEDEPARFYGGKTNPMEKRTRVRARMISQTLQELMNQSDQIFVQGHRQPDM
CCCCEEEEECCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCH
DAVGACLGIRRIAEMNGKQCWIVLDEQNVHSDIQRLLDQLKSDENIESAIISPEEALEKA
HHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHC
TDQSLLIMADHSKPSISMSQALYERLENRVMIIDHHRRGEEFPENPVLVYIEPYASSTCE
CCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCCCHHH
LITEMFEYQSHDAEPINKIEATAMLTGIVIDTKSFSLRSGSRTFDAASYLRSAGADSLLV
HHHHHHHHCCCCCCHHHHHHHHHHHEEEEEECCCCCCCCCCCCHHHHHHHHHCCCHHHHH
QQFMKENVDSYLQRNHLIETVEFVNQDMALCVGEDDQVYDPVTAAQAADSLLSMSGVDAS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEE
FVITRREDGRVGISARSLGEINVQVYMEKLGGGGHLSNAATQIEGQSVEAVKQSLIDLLT
EEEEECCCCCEEEEECCCCCEEHEEEEECCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHH
ATDEPTTESN
CCCCCCCCCC
>Mature Secondary Structure
MKKIFSREKIPFFLQNQQLRLLALVIFSLSLIMLVTGYLMNWIFGTVVLILIVMAVVISY
CCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NTLIELSSSANEYISDLSYRIKRGEQEALIQMPIGVMIFNSDQTIEWINPYLQRYFGDKD
HHHEEECCCHHHHHHHHHHHHHCCCHHHHEECCCEEEEECCCCCHHHHHHHHHHHCCCCC
VLGYRLEDIEPTLAATLNAHLDEPATIRWQDYQFDVRVQQSTNTVYMMDVTKYAELTDQF
CCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCEEEEEEECCCCEEEEEEHHHHHHHHHCC
EDEKLVIGQIFLDNYDEITQSMTDTDISNLNNYVTNELSKWTQMFGMYLKRLDDDHFFLL
CCCEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
GYASSLRRVEENKFRILDRIRESTSKQNFPLTLSIGIAYGERNMNNLADLAQSNMDLALG
EHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHCCCCEEEC
RGGDQVVVKSEDEPARFYGGKTNPMEKRTRVRARMISQTLQELMNQSDQIFVQGHRQPDM
CCCCEEEEECCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCH
DAVGACLGIRRIAEMNGKQCWIVLDEQNVHSDIQRLLDQLKSDENIESAIISPEEALEKA
HHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHC
TDQSLLIMADHSKPSISMSQALYERLENRVMIIDHHRRGEEFPENPVLVYIEPYASSTCE
CCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCCCHHH
LITEMFEYQSHDAEPINKIEATAMLTGIVIDTKSFSLRSGSRTFDAASYLRSAGADSLLV
HHHHHHHHCCCCCCHHHHHHHHHHHEEEEEECCCCCCCCCCCCHHHHHHHHHCCCHHHHH
QQFMKENVDSYLQRNHLIETVEFVNQDMALCVGEDDQVYDPVTAAQAADSLLSMSGVDAS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEE
FVITRREDGRVGISARSLGEINVQVYMEKLGGGGHLSNAATQIEGQSVEAVKQSLIDLLT
EEEEECCCCCEEEEECCCCCEEHEEEEECCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHH
ATDEPTTESN
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]