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The map label for this gene is 28211396

Identifier: 28211396

GI number: 28211396

Start: 1859302

End: 1860120

Strand: Direct

Name: 28211396

Synonym: CTC01745

Alternate gene names: NA

Gene position: 1859302-1860120 (Clockwise)

Preceding gene: 28211347

Following gene: 28211407

Centisome position: 66.42

GC content: 28.33

Gene sequence:

>819_bases
TTGGATAAATTAATCTTTGGAATTTCTGGACTTCCTATAGGAGACGGAAATTCAAAATTTAATTATAAAACTGGTATAAA
ATATTTAAACTCTATAGGTTTAGAAGCCATGGAACTTCCCTTTGTTAGATCTGTTAATATTACTGAAAAGAATAAAGAAG
AGGTTTTAAACGCTAAAATAGAAAATAATATTTATCTCTCTGCCCATGGTTCTTATTTTATAAATTTAAATGCTGTAGAA
CTAGAAAAGCAAGAAAAGTCTATGGAAAGAATTATAAAAGGAGCAGACGGATTGAAAAAGGTAGAAGGTAGAAGTTTAAT
TTTTCATCCAGGATTTTATTTAAAAGATACAAAAGAGAAAACCTTTAATACCATAAAAGAAAATCTTAAAAAACTACCCT
ATTTTGGAATAGACTATAGGTTAGAAACCACTGGAAAACCTACTCAATTTGGCTCTTTAGAGGAAATCGTAGCACTTTGT
AAAGATATTAAACACTGCAAACCCTGCATAGATTTTTCTCATTTACATGCAAGATATAATGGTACATTAAAAAATTATGA
TGACTTTGCAAATATTTTAGATTATATGCATAAAAATTTAGGATACGAAGCATTGGAAGATATGCATATACATATATCTG
GTATTCACTATGGTGAAAAGGGTGAAAAAAATCACCTTCCATTTTTGGAAAGTGATTTTAACTATAAAGATTGCATGAAA
GCTTTTAAATCTTTTGATATTAAAGGATGTATTATATGTGAAAGCCCTGTTTTAGAAAAGGATGCTCTTTTACTTAAAGA
GTACTACTACTCTTTATAG

Upstream 100 bases:

>100_bases
TTCATTAAAAACTCTGTTTTTTACAGGGTTGACAACAGACGTTCTTTAAAAGTAAAATTATTATATTAATAGTTATTAGT
TAAAAGGAGTTGTTATTACT

Downstream 100 bases:

>100_bases
AAAATAACCAATAATGAATAGTGAGCAGCTGAGGATAATTCTTCTCCGTTATCATTACGAAAAGTTTTTAATTATTCGGA
GATAAATATCCATAGTTATT

Product: endonuclease IV

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MDKLIFGISGLPIGDGNSKFNYKTGIKYLNSIGLEAMELPFVRSVNITEKNKEEVLNAKIENNIYLSAHGSYFINLNAVE
LEKQEKSMERIIKGADGLKKVEGRSLIFHPGFYLKDTKEKTFNTIKENLKKLPYFGIDYRLETTGKPTQFGSLEEIVALC
KDIKHCKPCIDFSHLHARYNGTLKNYDDFANILDYMHKNLGYEALEDMHIHISGIHYGEKGEKNHLPFLESDFNYKDCMK
AFKSFDIKGCIICESPVLEKDALLLKEYYYSL

Sequences:

>Translated_272_residues
MDKLIFGISGLPIGDGNSKFNYKTGIKYLNSIGLEAMELPFVRSVNITEKNKEEVLNAKIENNIYLSAHGSYFINLNAVE
LEKQEKSMERIIKGADGLKKVEGRSLIFHPGFYLKDTKEKTFNTIKENLKKLPYFGIDYRLETTGKPTQFGSLEEIVALC
KDIKHCKPCIDFSHLHARYNGTLKNYDDFANILDYMHKNLGYEALEDMHIHISGIHYGEKGEKNHLPFLESDFNYKDCMK
AFKSFDIKGCIICESPVLEKDALLLKEYYYSL
>Mature_272_residues
MDKLIFGISGLPIGDGNSKFNYKTGIKYLNSIGLEAMELPFVRSVNITEKNKEEVLNAKIENNIYLSAHGSYFINLNAVE
LEKQEKSMERIIKGADGLKKVEGRSLIFHPGFYLKDTKEKTFNTIKENLKKLPYFGIDYRLETTGKPTQFGSLEEIVALC
KDIKHCKPCIDFSHLHARYNGTLKNYDDFANILDYMHKNLGYEALEDMHIHISGIHYGEKGEKNHLPFLESDFNYKDCMK
AFKSFDIKGCIICESPVLEKDALLLKEYYYSL

Specific function: Unknown

COG id: COG0648

COG function: function code L; Endonuclease IV

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001719
- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: 3.1.21.2

Molecular weight: Translated: 31239; Mature: 31239

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: PS00094 C5_MTASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLIFGISGLPIGDGNSKFNYKTGIKYLNSIGLEAMELPFVRSVNITEKNKEEVLNAKI
CCCEEEECCCCEECCCCCCCCHHHHHHHHHHCCCHHHCCCCEEECCCCCCCHHHHHHHHH
ENNIYLSAHGSYFINLNAVELEKQEKSMERIIKGADGLKKVEGRSLIFHPGFYLKDTKEK
CCCEEEEECCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEECCCCEEECCHHH
TFNTIKENLKKLPYFGIDYRLETTGKPTQFGSLEEIVALCKDIKHCKPCIDFSHLHARYN
HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHC
GTLKNYDDFANILDYMHKNLGYEALEDMHIHISGIHYGEKGEKNHLPFLESDFNYKDCMK
CCCCCHHHHHHHHHHHHHHCCHHHHHCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHH
AFKSFDIKGCIICESPVLEKDALLLKEYYYSL
HHHCCCCCEEEEECCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MDKLIFGISGLPIGDGNSKFNYKTGIKYLNSIGLEAMELPFVRSVNITEKNKEEVLNAKI
CCCEEEECCCCEECCCCCCCCHHHHHHHHHHCCCHHHCCCCEEECCCCCCCHHHHHHHHH
ENNIYLSAHGSYFINLNAVELEKQEKSMERIIKGADGLKKVEGRSLIFHPGFYLKDTKEK
CCCEEEEECCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEECCCCEEECCHHH
TFNTIKENLKKLPYFGIDYRLETTGKPTQFGSLEEIVALCKDIKHCKPCIDFSHLHARYN
HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHC
GTLKNYDDFANILDYMHKNLGYEALEDMHIHISGIHYGEKGEKNHLPFLESDFNYKDCMK
CCCCCHHHHHHHHHHHHHHCCHHHHHCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHH
AFKSFDIKGCIICESPVLEKDALLLKEYYYSL
HHHCCCCCEEEEECCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]