Click here to switch to the map view.

The map label for this gene is 28211136

Identifier: 28211136

GI number: 28211136

Start: 1576481

End: 1577302

Strand: Direct

Name: 28211136

Synonym: CTC01460

Alternate gene names: NA

Gene position: 1576481-1577302 (Clockwise)

Preceding gene: 28211133

Following gene: 28211137

Centisome position: 56.32

GC content: 25.67

Gene sequence:

>822_bases
ATGGATGCTATGTTTAAAAGTTTAAGTAAAAAAGTTATTATATCTGTGGTAATACTTATAGTAGTCTTATTAGGTGTATT
GGGAATGAAAAATTATAACAAGTCAAAGGATTATAAAAATCTAGTTACTACTGCTAATGAATATATGAATGAAAAAGATT
ATGATAAGGCTATGGACAAATTCAAAGAATCTTTAGATTATAAAAAAGATCAGAAAGCAGAAGAAAAACTAGAAGAATGT
AAGAATGAATTGATTAATCTTTCCAAGGAAGCTTTAAAAAACAAGGAATACGAAAAGGCAGATAATTATTTAAATGTATT
ACTCAAACATGATGGTAAAAATGAAGAAGCAATAAAAATGAAAAATACTATAAAAGATGAAATACAAAAATCTAAAGAAG
AGGAAGAAATAAAAAAGGCAATAGAAAAGGAAAAAAGAGAGCAAGAACTAAAAAAACAAATGGACAAAGAAGAACAAGCT
AAGAAAAAAACTGGAATAACTGAACAAAACAAGAAAAAAGAAGTTAAGGAAAACAATAAAATTACAAAAGAAAAAGCAGA
AAGTTTAGTTCAACCTCTTAAAAATAAAAATGAGGAGATAAGATATTTAGGAACTAGACAAGTTCCAGAAATCCCAGCAA
AATCTACTCCGTATAAAAAGTTTCCTAAAGAAATTGAAAATAAAAAAGTATACATTTTTGATATTGCAGTAGTATATAAT
AGTGATTCTAAAGCAACTATAGGAAGATACTATGTAGATTTTAGCGGAAATATTTATAAGGATACCTATCCATCTAATCT
AGAATGTGTTAAAGTTAAATAA

Upstream 100 bases:

>100_bases
AGTTACGCACATATAAAACTTAGATATAATAAATTATTAAGTAAAGTAGCTTAACAGTTAGCTCTACTTAAAAATATCAA
TTTAAAAATAATAAAGGGAG

Downstream 100 bases:

>100_bases
TTTATAAGGGAAGTCATTAGACTTCCCTTTAACTATCTCATTTTCTTGTTCCATTCTTATCAAACATCATTCTTAAATGT
ATTTCGGTATATACAATACC

Product: membrane associated protein

Products: NA

Alternate protein names: TPR Domain Protein

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MDAMFKSLSKKVIISVVILIVVLLGVLGMKNYNKSKDYKNLVTTANEYMNEKDYDKAMDKFKESLDYKKDQKAEEKLEEC
KNELINLSKEALKNKEYEKADNYLNVLLKHDGKNEEAIKMKNTIKDEIQKSKEEEEIKKAIEKEKREQELKKQMDKEEQA
KKKTGITEQNKKKEVKENNKITKEKAESLVQPLKNKNEEIRYLGTRQVPEIPAKSTPYKKFPKEIENKKVYIFDIAVVYN
SDSKATIGRYYVDFSGNIYKDTYPSNLECVKVK

Sequences:

>Translated_273_residues
MDAMFKSLSKKVIISVVILIVVLLGVLGMKNYNKSKDYKNLVTTANEYMNEKDYDKAMDKFKESLDYKKDQKAEEKLEEC
KNELINLSKEALKNKEYEKADNYLNVLLKHDGKNEEAIKMKNTIKDEIQKSKEEEEIKKAIEKEKREQELKKQMDKEEQA
KKKTGITEQNKKKEVKENNKITKEKAESLVQPLKNKNEEIRYLGTRQVPEIPAKSTPYKKFPKEIENKKVYIFDIAVVYN
SDSKATIGRYYVDFSGNIYKDTYPSNLECVKVK
>Mature_273_residues
MDAMFKSLSKKVIISVVILIVVLLGVLGMKNYNKSKDYKNLVTTANEYMNEKDYDKAMDKFKESLDYKKDQKAEEKLEEC
KNELINLSKEALKNKEYEKADNYLNVLLKHDGKNEEAIKMKNTIKDEIQKSKEEEEIKKAIEKEKREQELKKQMDKEEQA
KKKTGITEQNKKKEVKENNKITKEKAESLVQPLKNKNEEIRYLGTRQVPEIPAKSTPYKKFPKEIENKKVYIFDIAVVYN
SDSKATIGRYYVDFSGNIYKDTYPSNLECVKVK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31967; Mature: 31967

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAMFKSLSKKVIISVVILIVVLLGVLGMKNYNKSKDYKNLVTTANEYMNEKDYDKAMDK
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
FKESLDYKKDQKAEEKLEECKNELINLSKEALKNKEYEKADNYLNVLLKHDGKNEEAIKM
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHH
KNTIKDEIQKSKEEEEIKKAIEKEKREQELKKQMDKEEQAKKKTGITEQNKKKEVKENNK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
ITKEKAESLVQPLKNKNEEIRYLGTRQVPEIPAKSTPYKKFPKEIENKKVYIFDIAVVYN
CCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEEEEC
SDSKATIGRYYVDFSGNIYKDTYPSNLECVKVK
CCCCCEEEEEEEECCCCEECCCCCCCCEEEEEC
>Mature Secondary Structure
MDAMFKSLSKKVIISVVILIVVLLGVLGMKNYNKSKDYKNLVTTANEYMNEKDYDKAMDK
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
FKESLDYKKDQKAEEKLEECKNELINLSKEALKNKEYEKADNYLNVLLKHDGKNEEAIKM
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHH
KNTIKDEIQKSKEEEEIKKAIEKEKREQELKKQMDKEEQAKKKTGITEQNKKKEVKENNK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
ITKEKAESLVQPLKNKNEEIRYLGTRQVPEIPAKSTPYKKFPKEIENKKVYIFDIAVVYN
CCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEEEEC
SDSKATIGRYYVDFSGNIYKDTYPSNLECVKVK
CCCCCEEEEEEEECCCCEECCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA