Definition Clostridium tetani E88 chromosome, complete genome.
Accession NC_004557
Length 2,799,251

Click here to switch to the map view.

The map label for this gene is 28211091

Identifier: 28211091

GI number: 28211091

Start: 1525542

End: 1526228

Strand: Direct

Name: 28211091

Synonym: CTC01414

Alternate gene names: NA

Gene position: 1525542-1526228 (Clockwise)

Preceding gene: 28211090

Following gene: 28211092

Centisome position: 54.5

GC content: 27.22

Gene sequence:

>687_bases
TTGAATAAAAAAATTAGAGAGGAAATTTTTGAATTAATAGATGAAGATTATAAGAAGTTTTCTTCTTCTCTTTTACCTAA
TATAGATAACATTTTAGGAGTTAGATTACCTGAACTTCGTAAGCTTGCAAAGAAAGTAGCAAAGGATGATTGGCGGAAAT
TCATAGACACTGCTGATAACCAGTATTTTGAACAAATTATGCTTCAAGGAATGGTTTTAGGTTATATAAAAACAAACATT
GAAGAAATTCTTCTATATGTTGCTGAATTTATACCGAAAATTGATAACTGGTCTGTGTGTGATAGCTTTTGTGGTGGTTT
GAAATTTACTAATAATAATATGGAACAGGTTTGGAACTTTATACAACCATTTTTATCTTCTAAAAAAGAATATGAGGTTC
GTTTTGCCGTTGTAATGCTACTTGATTTCTATATTAACGATGAATATATAGATAAAGTACTTAAATTATTAGATAATGTA
AATCATCCTGGCTACTATGCAAAAATGGCAGTTGCTTGGGCAGTTTCTATTTGTTATATAAAATTTCCGGAAAAAACAAT
GGATTATTTAAAAAATAATAATTTAGATTATTTTACATATAATAAATCACTTCAAAAAATTTGTGAGTCTTTACGGGTGG
ATAAAGAAACAAAAAAAATTATTAAAGCTATGAGGCGAAAATTATAA

Upstream 100 bases:

>100_bases
CAAATGGAAAATTAGTAGGATATGGTGGTGGACTAAAAATTAAAGAATACTTATTAAAAATTGAAAAAAATATAAATAGT
TAATAAAAAGGAGATAAACA

Downstream 100 bases:

>100_bases
ATTATTTTATAAAACATTAATAGTGCAACAACTTGTTGCACTATTAAAAGTAATCTTATTTAAAACTTATATATATCTAT
TTTTTTGATATATAGCTTCA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MNKKIREEIFELIDEDYKKFSSSLLPNIDNILGVRLPELRKLAKKVAKDDWRKFIDTADNQYFEQIMLQGMVLGYIKTNI
EEILLYVAEFIPKIDNWSVCDSFCGGLKFTNNNMEQVWNFIQPFLSSKKEYEVRFAVVMLLDFYINDEYIDKVLKLLDNV
NHPGYYAKMAVAWAVSICYIKFPEKTMDYLKNNNLDYFTYNKSLQKICESLRVDKETKKIIKAMRRKL

Sequences:

>Translated_228_residues
MNKKIREEIFELIDEDYKKFSSSLLPNIDNILGVRLPELRKLAKKVAKDDWRKFIDTADNQYFEQIMLQGMVLGYIKTNI
EEILLYVAEFIPKIDNWSVCDSFCGGLKFTNNNMEQVWNFIQPFLSSKKEYEVRFAVVMLLDFYINDEYIDKVLKLLDNV
NHPGYYAKMAVAWAVSICYIKFPEKTMDYLKNNNLDYFTYNKSLQKICESLRVDKETKKIIKAMRRKL
>Mature_228_residues
MNKKIREEIFELIDEDYKKFSSSLLPNIDNILGVRLPELRKLAKKVAKDDWRKFIDTADNQYFEQIMLQGMVLGYIKTNI
EEILLYVAEFIPKIDNWSVCDSFCGGLKFTNNNMEQVWNFIQPFLSSKKEYEVRFAVVMLLDFYINDEYIDKVLKLLDNV
NHPGYYAKMAVAWAVSICYIKFPEKTMDYLKNNNLDYFTYNKSLQKICESLRVDKETKKIIKAMRRKL

Specific function: Unknown

COG id: COG4912

COG function: function code L; Predicted DNA alkylation repair enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27090; Mature: 27090

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKIREEIFELIDEDYKKFSSSLLPNIDNILGVRLPELRKLAKKVAKDDWRKFIDTADN
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
QYFEQIMLQGMVLGYIKTNIEEILLYVAEFIPKIDNWSVCDSFCGGLKFTNNNMEQVWNF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEECCCCHHHHHHH
IQPFLSSKKEYEVRFAVVMLLDFYINDEYIDKVLKLLDNVNHPGYYAKMAVAWAVSICYI
HHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
KFPEKTMDYLKNNNLDYFTYNKSLQKICESLRVDKETKKIIKAMRRKL
CCCHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MNKKIREEIFELIDEDYKKFSSSLLPNIDNILGVRLPELRKLAKKVAKDDWRKFIDTADN
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
QYFEQIMLQGMVLGYIKTNIEEILLYVAEFIPKIDNWSVCDSFCGGLKFTNNNMEQVWNF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEECCCCHHHHHHH
IQPFLSSKKEYEVRFAVVMLLDFYINDEYIDKVLKLLDNVNHPGYYAKMAVAWAVSICYI
HHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
KFPEKTMDYLKNNNLDYFTYNKSLQKICESLRVDKETKKIIKAMRRKL
CCCHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA