BacMap

Definition	Clostridium tetani E88 chromosome, complete genome.
Accession	NC_004557
Length	2,799,251

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The map label for this gene is yhdF [H]

Identifier: 28211048

GI number: 28211048

Start: 1476572

End: 1477453

Strand: Direct

Name: yhdF [H]

Synonym: CTC01369

Alternate gene names: 28211048

Gene position: 1476572-1477453 (Clockwise)

Preceding gene: 28211044

Following gene: 28211060

Centisome position: 52.75

GC content: 33.9

Gene sequence:

>882_bases
ATGGATAATGAAACTCAATTTATAAATAGTTTTCCAAAATCTATACCTGGTCAACATCAAACAAAGCATCCTGGCATTGA
ATCTATTATGAACCCAAGACCTATATTTGATAATCCAAACTATGTAGCTTCGGACAAATTAAAGGATAAAGTAGCTTTAA
TTACAGGAGGAGATAGTGGTATTGGAAGAGCTGTAGCTCTAGCTTATGCAAAGGAAGGCGCAGATATTTCCATTGTTTAT
TATGATGAGCATGAGGATGCAGAGGAAACAAAGGCTTTAATAGAAAACTTAGGTAGAAAATGCATACTAATTCCTGGTGA
TATAACAGATTCAAACTTTTGTAATAATGCTGTTAATGAAACTGTAAATTCCCTTAATGGTCTTCATATTTTAGTAAATA
ATGCCGCAGTACAATATACTCAAAATAGTATAGAAGACATAACTGAAGAACAATTAGAAAAGACATTTAGAACAAATATA
TTCAGTATGTTCTATTTAGTAAAAGCAAGCATTCCACATCTTAAACAAGGAAGTTCTATTATAAATACAGCTTCCATAAC
AGCTTATAAAGGAGATGAATTACTAATAGATTATTCCTGTACTAAGGGAGCTGTAGTAACCTTTACAAGATCCCTTGCTC
TATCTTTGGCATCAATGGGTATAAGGGTAAATGCTGTGGCACCTGGTCCTATATGGACTCCACTTATTCCTTCTTCCTTT
GATGTAGCTAAAGTAGAACAGTTTGGTAAAAATACTGCTCTTACAAGACCTGCACAACCTGTAGAATTAGCAGGTGCATA
TGTATATTTGGCCTCCTGTGATGCATCTTATGTAACTGGGGAAATAATACATGTAAATGGCGGAAAATTTGTAAGTGGAT
AA

Upstream 100 bases:

>100_bases
TACTCTAATAATACCACCATTTCAAATTTTTATCTGATTTTATTATAGTGAATAAATCTATATCATATGAGCAAAAATAA
TTTAGAGAAGAGGTGAAAAT

Downstream 100 bases:

>100_bases
AATAAACCTATCACATATCTTTAAAAATATGTGATAGGTTTACAATTATTATATATTAATAAGACTTTCTACTAAAGTAT
GTATATTCTCTAGATATTTA

Product: short-chain alcohol dehydrogenase, general stress protein 39

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MDNETQFINSFPKSIPGQHQTKHPGIESIMNPRPIFDNPNYVASDKLKDKVALITGGDSGIGRAVALAYAKEGADISIVY
YDEHEDAEETKALIENLGRKCILIPGDITDSNFCNNAVNETVNSLNGLHILVNNAAVQYTQNSIEDITEEQLEKTFRTNI
FSMFYLVKASIPHLKQGSSIINTASITAYKGDELLIDYSCTKGAVVTFTRSLALSLASMGIRVNAVAPGPIWTPLIPSSF
DVAKVEQFGKNTALTRPAQPVELAGAYVYLASCDASYVTGEIIHVNGGKFVSG

Sequences:

>Translated_293_residues
MDNETQFINSFPKSIPGQHQTKHPGIESIMNPRPIFDNPNYVASDKLKDKVALITGGDSGIGRAVALAYAKEGADISIVY
YDEHEDAEETKALIENLGRKCILIPGDITDSNFCNNAVNETVNSLNGLHILVNNAAVQYTQNSIEDITEEQLEKTFRTNI
FSMFYLVKASIPHLKQGSSIINTASITAYKGDELLIDYSCTKGAVVTFTRSLALSLASMGIRVNAVAPGPIWTPLIPSSF
DVAKVEQFGKNTALTRPAQPVELAGAYVYLASCDASYVTGEIIHVNGGKFVSG
>Mature_293_residues
MDNETQFINSFPKSIPGQHQTKHPGIESIMNPRPIFDNPNYVASDKLKDKVALITGGDSGIGRAVALAYAKEGADISIVY
YDEHEDAEETKALIENLGRKCILIPGDITDSNFCNNAVNETVNSLNGLHILVNNAAVQYTQNSIEDITEEQLEKTFRTNI
FSMFYLVKASIPHLKQGSSIINTASITAYKGDELLIDYSCTKGAVVTFTRSLALSLASMGIRVNAVAPGPIWTPLIPSSF
DVAKVEQFGKNTALTRPAQPVELAGAYVYLASCDASYVTGEIIHVNGGKFVSG

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=252, Percent_Identity=32.9365079365079, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=32.2314049586777, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI59889578, Length=227, Percent_Identity=29.9559471365639, Blast_Score=98, Evalue=8e-21,
Organism=Homo sapiens, GI19923817, Length=260, Percent_Identity=28.4615384615385, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI10190704, Length=259, Percent_Identity=28.1853281853282, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI5031737, Length=250, Percent_Identity=30, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI4758504, Length=260, Percent_Identity=29.2307692307692, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI15277342, Length=260, Percent_Identity=26.9230769230769, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI126723750, Length=255, Percent_Identity=27.0588235294118, Blast_Score=85, Evalue=8e-17,
Organism=Homo sapiens, GI66933014, Length=257, Percent_Identity=29.5719844357977, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI31542939, Length=209, Percent_Identity=30.622009569378, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI142976729, Length=197, Percent_Identity=28.9340101522843, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI33667109, Length=204, Percent_Identity=28.921568627451, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI210032110, Length=184, Percent_Identity=28.2608695652174, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI126723191, Length=184, Percent_Identity=29.3478260869565, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI83715985, Length=260, Percent_Identity=26.9230769230769, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI7705925, Length=257, Percent_Identity=27.2373540856031, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI7706318, Length=214, Percent_Identity=29.4392523364486, Blast_Score=69, Evalue=4e-12,
Organism=Escherichia coli, GI1789378, Length=293, Percent_Identity=46.7576791808874, Blast_Score=264, Evalue=5e-72,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=35.1020408163265, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1787335, Length=247, Percent_Identity=31.1740890688259, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=30.7692307692308, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI87082100, Length=253, Percent_Identity=30.0395256916996, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=29.3172690763052, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787905, Length=246, Percent_Identity=30.0813008130081, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=31.6, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI1788459, Length=243, Percent_Identity=30.0411522633745, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI2367365, Length=242, Percent_Identity=28.099173553719, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786812, Length=250, Percent_Identity=26, Blast_Score=77, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=33.2, Blast_Score=116, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17551412, Length=261, Percent_Identity=34.0996168582375, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17560676, Length=251, Percent_Identity=31.8725099601594, Blast_Score=108, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=33.206106870229, Blast_Score=108, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI25147288, Length=246, Percent_Identity=32.520325203252, Blast_Score=104, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17538480, Length=260, Percent_Identity=31.5384615384615, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17560220, Length=262, Percent_Identity=32.824427480916, Blast_Score=101, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI17560332, Length=261, Percent_Identity=30.6513409961686, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17531453, Length=260, Percent_Identity=33.4615384615385, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17560150, Length=259, Percent_Identity=30.5019305019305, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI72000259, Length=268, Percent_Identity=30.9701492537313, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17555706, Length=276, Percent_Identity=30.7971014492754, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI71994600, Length=249, Percent_Identity=30.5220883534137, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=29.3893129770992, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17562910, Length=261, Percent_Identity=30.2681992337165, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17536025, Length=276, Percent_Identity=28.9855072463768, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17562908, Length=263, Percent_Identity=29.6577946768061, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI71994604, Length=247, Percent_Identity=29.5546558704453, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17562906, Length=261, Percent_Identity=28.735632183908, Blast_Score=91, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17559104, Length=268, Percent_Identity=30.9701492537313, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17562904, Length=196, Percent_Identity=30.6122448979592, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17538182, Length=255, Percent_Identity=29.0196078431373, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI17562990, Length=259, Percent_Identity=30.1158301158301, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17538486, Length=261, Percent_Identity=29.8850574712644, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17536651, Length=276, Percent_Identity=28.2608695652174, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17565030, Length=269, Percent_Identity=29.368029739777, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17563726, Length=261, Percent_Identity=27.5862068965517, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17564282, Length=197, Percent_Identity=31.4720812182741, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=28.8617886178862, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17567345, Length=195, Percent_Identity=28.7179487179487, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI193203115, Length=209, Percent_Identity=26.3157894736842, Blast_Score=68, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI193203117, Length=189, Percent_Identity=27.5132275132275, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17558006, Length=224, Percent_Identity=27.2321428571429, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=197, Percent_Identity=30.4568527918782, Blast_Score=70, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6324126, Length=252, Percent_Identity=26.5873015873016, Blast_Score=68, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=32.5301204819277, Blast_Score=117, Evalue=8e-27,
Organism=Drosophila melanogaster, GI28571526, Length=249, Percent_Identity=33.3333333333333, Blast_Score=114, Evalue=6e-26,
Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=32.8, Blast_Score=110, Evalue=9e-25,
Organism=Drosophila melanogaster, GI21355319, Length=256, Percent_Identity=32.8125, Blast_Score=108, Evalue=4e-24,
Organism=Drosophila melanogaster, GI23397609, Length=250, Percent_Identity=30, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24639444, Length=247, Percent_Identity=30.3643724696356, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=32.3886639676113, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24644337, Length=249, Percent_Identity=36.144578313253, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI17737361, Length=258, Percent_Identity=27.906976744186, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI281364892, Length=185, Percent_Identity=28.6486486486486, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 31694; Mature: 31694

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNETQFINSFPKSIPGQHQTKHPGIESIMNPRPIFDNPNYVASDKLKDKVALITGGDSG
CCCHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCCEEEEEECCCCC
IGRAVALAYAKEGADISIVYYDEHEDAEETKALIENLGRKCILIPGDITDSNFCNNAVNE
CCHHHEEEECCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH
TVNSLNGLHILVNNAAVQYTQNSIEDITEEQLEKTFRTNIFSMFYLVKASIPHLKQGSSI
HHHHCCCEEEEEECCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
INTASITAYKGDELLIDYSCTKGAVVTFTRSLALSLASMGIRVNAVAPGPIWTPLIPSSF
EEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCC
DVAKVEQFGKNTALTRPAQPVELAGAYVYLASCDASYVTGEIIHVNGGKFVSG
CHHHHHHCCCCCCCCCCCCCHHHCCEEEEEEECCCCCEEEEEEEECCCEECCC
>Mature Secondary Structure
MDNETQFINSFPKSIPGQHQTKHPGIESIMNPRPIFDNPNYVASDKLKDKVALITGGDSG
CCCHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCCEEEEEECCCCC
IGRAVALAYAKEGADISIVYYDEHEDAEETKALIENLGRKCILIPGDITDSNFCNNAVNE
CCHHHEEEECCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH
TVNSLNGLHILVNNAAVQYTQNSIEDITEEQLEKTFRTNIFSMFYLVKASIPHLKQGSSI
HHHHCCCEEEEEECCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
INTASITAYKGDELLIDYSCTKGAVVTFTRSLALSLASMGIRVNAVAPGPIWTPLIPSSF
EEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCC
DVAKVEQFGKNTALTRPAQPVELAGAYVYLASCDASYVTGEIIHVNGGKFVSG
CHHHHHHCCCCCCCCCCCCCHHHCCEEEEEEECCCCCEEEEEEEECCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]