Click here to switch to the map view.

The map label for this gene is rsgA

Identifier: 28210914

GI number: 28210914

Start: 1314172

End: 1315044

Strand: Direct

Name: rsgA

Synonym: CTC01226

Alternate gene names: 28210914

Gene position: 1314172-1315044 (Clockwise)

Preceding gene: 28210913

Following gene: 28210915

Centisome position: 46.95

GC content: 28.41

Gene sequence:

>873_bases
ATGCAAGGAATCATTACAAAGGGAATAGGTGGATTCTATTATATAAAAACTGAAGATGGATTATATGAATGTAAAGCAAG
GGGTAAGTTCAGATTAGATGAACTTACCCCTATGGTTGGAGACAAAGTGGAAATAGAAATTGACAATAACTCTAAAGGTA
CCATAGAAAAGATATTTGAAAGAAAAAATAAATTAATTAGGCCTGCTGTATCTAATATATCACAGGCTATAATTGTATTT
GCATTTAAAAACCCTAATATTAATTTAGATCTATTAAATAAATTTTTATTACAATGTGAGTATAACGAAATAAATGCTGT
AGTAGCCTTTAATAAAGTAGATTTAGTAGAGAATCCAGAGAAAGAAGAAGTAGTAGATATAATAAAAAGTGCAGGTTATG
AAGTTATATACTTAAATGCTAAAGAAGGTATGGGCATTGAAAAAATAAGGGAAAAACTAAAAGGGAATTTAAATGTACTA
TGTGGACCTTCTGGAGCAGGAAAATCAACTATAATAAATAAATTAGTAGGTAAAGATGTAATGGAGACAGGTCAAATAAG
TGAAAAATTAAAAAGAGGTAAGCATACCACAAGACACAGTGAACTTATAGAAGTTGAAGATGGATTTTTAGTAGACACAC
CTGGCTTCTCCTCTTTAAGTATAGAGGATATAGAAAAGGAAGAAATTCAATTTTTATTTCCAGAGTTTATAAAATATATA
AATGGATGTAAGTTTACTGGATGCCTACATTATAAAGAACCAAGTTGTGTAGTAAAAAATGCTTTAGAGCAAGGAAAAAT
ACATAAGAAAAGATATGAATTTTATATACAAATAATAGAAGAAAAATTAAGGGGGAAAAATAACAAATGGTAA

Upstream 100 bases:

>100_bases
TGAAAATAAAAATATTACTGCACCTGAAGAGGATGGAAAAAAAGAAGATACAAAACAGGATAAAAATAAAAAAAGTCAAT
AAAAACATTTAGGAGGAATT

Downstream 100 bases:

>100_bases
AAATAGCACCTTCAATATTATCAGCAGATTTCGCAAATTTAGGTAGGGACATAGAAGCCATAGAAAAATATGGTGCCCAC
GTTGTACATTTTGATGTAAT

Product: ribosome-associated GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MQGIITKGIGGFYYIKTEDGLYECKARGKFRLDELTPMVGDKVEIEIDNNSKGTIEKIFERKNKLIRPAVSNISQAIIVF
AFKNPNINLDLLNKFLLQCEYNEINAVVAFNKVDLVENPEKEEVVDIIKSAGYEVIYLNAKEGMGIEKIREKLKGNLNVL
CGPSGAGKSTIINKLVGKDVMETGQISEKLKRGKHTTRHSELIEVEDGFLVDTPGFSSLSIEDIEKEEIQFLFPEFIKYI
NGCKFTGCLHYKEPSCVVKNALEQGKIHKKRYEFYIQIIEEKLRGKNNKW

Sequences:

>Translated_290_residues
MQGIITKGIGGFYYIKTEDGLYECKARGKFRLDELTPMVGDKVEIEIDNNSKGTIEKIFERKNKLIRPAVSNISQAIIVF
AFKNPNINLDLLNKFLLQCEYNEINAVVAFNKVDLVENPEKEEVVDIIKSAGYEVIYLNAKEGMGIEKIREKLKGNLNVL
CGPSGAGKSTIINKLVGKDVMETGQISEKLKRGKHTTRHSELIEVEDGFLVDTPGFSSLSIEDIEKEEIQFLFPEFIKYI
NGCKFTGCLHYKEPSCVVKNALEQGKIHKKRYEFYIQIIEEKLRGKNNKW
>Mature_290_residues
MQGIITKGIGGFYYIKTEDGLYECKARGKFRLDELTPMVGDKVEIEIDNNSKGTIEKIFERKNKLIRPAVSNISQAIIVF
AFKNPNINLDLLNKFLLQCEYNEINAVVAFNKVDLVENPEKEEVVDIIKSAGYEVIYLNAKEGMGIEKIREKLKGNLNVL
CGPSGAGKSTIINKLVGKDVMETGQISEKLKRGKHTTRHSELIEVEDGFLVDTPGFSSLSIEDIEKEEIQFLFPEFIKYI
NGCKFTGCLHYKEPSCVVKNALEQGKIHKKRYEFYIQIIEEKLRGKNNKW

Specific function: May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover

COG id: COG1162

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 engC GTPase domain

Homologues:

Organism=Escherichia coli, GI87082381, Length=309, Percent_Identity=30.0970873786408, Blast_Score=149, Evalue=3e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RSGA_CLOTE (Q895P5)

Other databases:

- EMBL:   AE015927
- RefSeq:   NP_781858.1
- ProteinModelPortal:   Q895P5
- SMR:   Q895P5
- GeneID:   1059144
- GenomeReviews:   AE015927_GR
- KEGG:   ctc:CTC01226
- NMPDR:   fig|212717.1.peg.1080
- HOGENOM:   HBG652450
- OMA:   TRARGVF
- PhylomeDB:   Q895P5
- ProtClustDB:   PRK00098
- BioCyc:   CTET212717:CTC_01226-MONOMER
- HAMAP:   MF_01820
- InterPro:   IPR010914
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004881
- Gene3D:   G3DSA:2.40.50.140
- TIGRFAMs:   TIGR00157

Pfam domain/function: PF03193 DUF258; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 32979; Mature: 32979

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS50936 ENGC_GTPASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGIITKGIGGFYYIKTEDGLYECKARGKFRLDELTPMVGDKVEIEIDNNSKGTIEKIFE
CCCCEECCCCCEEEEEECCCCEECCCCCCEEHHHHCCCCCCEEEEEECCCCCCHHHHHHH
RKNKLIRPAVSNISQAIIVFAFKNPNINLDLLNKFLLQCEYNEINAVVAFNKVDLVENPE
HHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCC
KEEVVDIIKSAGYEVIYLNAKEGMGIEKIREKLKGNLNVLCGPSGAGKSTIINKLVGKDV
HHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
METGQISEKLKRGKHTTRHSELIEVEDGFLVDTPGFSSLSIEDIEKEEIQFLFPEFIKYI
HHHHHHHHHHHCCCCCCCCCCEEEECCCEEEECCCCCCCCHHHCCHHHHHHHHHHHHHHH
NGCKFTGCLHYKEPSCVVKNALEQGKIHKKRYEFYIQIIEEKLRGKNNKW
CCCCEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQGIITKGIGGFYYIKTEDGLYECKARGKFRLDELTPMVGDKVEIEIDNNSKGTIEKIFE
CCCCEECCCCCEEEEEECCCCEECCCCCCEEHHHHCCCCCCEEEEEECCCCCCHHHHHHH
RKNKLIRPAVSNISQAIIVFAFKNPNINLDLLNKFLLQCEYNEINAVVAFNKVDLVENPE
HHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCC
KEEVVDIIKSAGYEVIYLNAKEGMGIEKIREKLKGNLNVLCGPSGAGKSTIINKLVGKDV
HHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
METGQISEKLKRGKHTTRHSELIEVEDGFLVDTPGFSSLSIEDIEKEEIQFLFPEFIKYI
HHHHHHHHHHHCCCCCCCCCCEEEECCCEEEECCCCCCCCHHHCCHHHHHHHHHHHHHHH
NGCKFTGCLHYKEPSCVVKNALEQGKIHKKRYEFYIQIIEEKLRGKNNKW
CCCCEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: GTP [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12552129