| Definition | Clostridium tetani E88 chromosome, complete genome. |
|---|---|
| Accession | NC_004557 |
| Length | 2,799,251 |
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The map label for this gene is 28210837
Identifier: 28210837
GI number: 28210837
Start: 1210958
End: 1211866
Strand: Direct
Name: 28210837
Synonym: CTC01144
Alternate gene names: NA
Gene position: 1210958-1211866 (Clockwise)
Preceding gene: 28210836
Following gene: 28210838
Centisome position: 43.26
GC content: 27.61
Gene sequence:
>909_bases GTGGAAAAAATGAAAGATAAAAAAGCATTAACTTTAACAGTAGTAGCAAATATGACTTCAAACTATTCAGAAGGATTAGG GAATATAGCAAGTGTACAAAAGGTATTTAAAAATAGAAAAGTATATACTATAAGAAGTAGAGAAAGCTTAAAAAATGCCA TTATGGTTCAAAGTGGAATGTATGATGATTTGCAAACAGAAGTGGATGGAGCAACTCAAAAGTTGGCAAATAAAGAGTTA AATGCATCTAATTGTAGAGCTCTTGAAGGAGGATATATGAGTACAAAGGGGACTACAAATATTAGAAAGAGTTCTTTTTA TTTAACAGATGCAATATCTTGTGAAAGCTTTGTAAATGAAACAAGGTTTCATAATAATCTATATTTAGCTAATAATGCAG CACAAGCTAAAAATATAAATTTACAAGAGAAGTCTAGTGAAGCTGGACTTATGCCTTATCAATATGAATATGATAAATCT TTAAAAATATATAGCATAACTATTGATTTAGAGATGATAGGAAAGGATGAGAATTTTCAGCAGGAAGAAGATTATAAAGA AGCTGATAACAAGGAAAAAGCAGATAGAGTAAATTCTATATTAAATGCAATAGAAAATTTAAGTTTAACAGTAAAAGGTA ACTTAGACAATGCAGAACCAGTATTTGTAGTTGGAGGTTTATCAAATAGAAAGACACATTATTTTGAAAATGTTGTAAAG GTGGAAGAAGAAAAATTAATAATATCAGAAGACTTAAAAGATAAGATAGAAAAAGGATATCATGTAGGACTTTTAGAAGG AAAGACATTACAAAATGAAAAGGAAATAAAAGAACAGTTAAATCCTATATCTATAACTAAATTTTTTGATATGATTAGAC ATGAAGTAAATACTTACTTTGGTATATAA
Upstream 100 bases:
>100_bases ATTTGTATATGATTTATATGATGATTTTGAAGAAAACAAAGACTTAGCATATACATTTATTAATGCATTATCAAAGAAAA GTGAAAATAACTAATAAGAG
Downstream 100 bases:
>100_bases CTAGAATAGAAGAAAGTAGGTAAAGATATGAAAGCATTAAGAATAGTGCTTACTCAAAGTAGTGCTAATTATAAAAAAGA AGAAACTATAGATAATAAGA
Product: hypothetical protein
Products: NA
Alternate protein names: CRISPR-Associated Autoregulator DevR Family Protein Protein; CRISPR-Associated Regulatory Protein DevR Family; Crispr-Associated Regulatory Protein Devr Family; CRISPR System Related Protein; CRISPR-Associated Autoregulator Devr Family Protein; CRISPR-Associated Regulatory Protein; CRISPR-Associated Negative Autoregulator
Number of amino acids: Translated: 302; Mature: 302
Protein sequence:
>302_residues MEKMKDKKALTLTVVANMTSNYSEGLGNIASVQKVFKNRKVYTIRSRESLKNAIMVQSGMYDDLQTEVDGATQKLANKEL NASNCRALEGGYMSTKGTTNIRKSSFYLTDAISCESFVNETRFHNNLYLANNAAQAKNINLQEKSSEAGLMPYQYEYDKS LKIYSITIDLEMIGKDENFQQEEDYKEADNKEKADRVNSILNAIENLSLTVKGNLDNAEPVFVVGGLSNRKTHYFENVVK VEEEKLIISEDLKDKIEKGYHVGLLEGKTLQNEKEIKEQLNPISITKFFDMIRHEVNTYFGI
Sequences:
>Translated_302_residues MEKMKDKKALTLTVVANMTSNYSEGLGNIASVQKVFKNRKVYTIRSRESLKNAIMVQSGMYDDLQTEVDGATQKLANKEL NASNCRALEGGYMSTKGTTNIRKSSFYLTDAISCESFVNETRFHNNLYLANNAAQAKNINLQEKSSEAGLMPYQYEYDKS LKIYSITIDLEMIGKDENFQQEEDYKEADNKEKADRVNSILNAIENLSLTVKGNLDNAEPVFVVGGLSNRKTHYFENVVK VEEEKLIISEDLKDKIEKGYHVGLLEGKTLQNEKEIKEQLNPISITKFFDMIRHEVNTYFGI >Mature_302_residues MEKMKDKKALTLTVVANMTSNYSEGLGNIASVQKVFKNRKVYTIRSRESLKNAIMVQSGMYDDLQTEVDGATQKLANKEL NASNCRALEGGYMSTKGTTNIRKSSFYLTDAISCESFVNETRFHNNLYLANNAAQAKNINLQEKSSEAGLMPYQYEYDKS LKIYSITIDLEMIGKDENFQQEEDYKEADNKEKADRVNSILNAIENLSLTVKGNLDNAEPVFVVGGLSNRKTHYFENVVK VEEEKLIISEDLKDKIEKGYHVGLLEGKTLQNEKEIKEQLNPISITKFFDMIRHEVNTYFGI
Specific function: Unknown
COG id: COG1857
COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34314; Mature: 34314
Theoretical pI: Translated: 5.54; Mature: 5.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKMKDKKALTLTVVANMTSNYSEGLGNIASVQKVFKNRKVYTIRSRESLKNAIMVQSGM CCCCCCCCEEEEEEEECCCCCHHHHCCHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCC YDDLQTEVDGATQKLANKELNASNCRALEGGYMSTKGTTNIRKSSFYLTDAISCESFVNE CHHHHHHHHHHHHHHHCCCCCCCCCEEECCCEECCCCCCCCCCCEEEEEEHHHHHHHHHH TRFHNNLYLANNAAQAKNINLQEKSSEAGLMPYQYEYDKSLKIYSITIDLEMIGKDENFQ HHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEEEEEEEECCCCCCC QEEDYKEADNKEKADRVNSILNAIENLSLTVKGNLDNAEPVFVVGGLSNRKTHYFENVVK CHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHH VEEEKLIISEDLKDKIEKGYHVGLLEGKTLQNEKEIKEQLNPISITKFFDMIRHEVNTYF HHHHHEEHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHC GI CC >Mature Secondary Structure MEKMKDKKALTLTVVANMTSNYSEGLGNIASVQKVFKNRKVYTIRSRESLKNAIMVQSGM CCCCCCCCEEEEEEEECCCCCHHHHCCHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCC YDDLQTEVDGATQKLANKELNASNCRALEGGYMSTKGTTNIRKSSFYLTDAISCESFVNE CHHHHHHHHHHHHHHHCCCCCCCCCEEECCCEECCCCCCCCCCCEEEEEEHHHHHHHHHH TRFHNNLYLANNAAQAKNINLQEKSSEAGLMPYQYEYDKSLKIYSITIDLEMIGKDENFQ HHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEEEEEEEECCCCCCC QEEDYKEADNKEKADRVNSILNAIENLSLTVKGNLDNAEPVFVVGGLSNRKTHYFENVVK CHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHH VEEEKLIISEDLKDKIEKGYHVGLLEGKTLQNEKEIKEQLNPISITKFFDMIRHEVNTYF HHHHHEEHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHC GI CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA