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The map label for this gene is nifU [H]

Identifier: 28210753

GI number: 28210753

Start: 1120294

End: 1120770

Strand: Direct

Name: nifU [H]

Synonym: CTC01051

Alternate gene names: 28210753

Gene position: 1120294-1120770 (Clockwise)

Preceding gene: 28210752

Following gene: 28210754

Centisome position: 40.02

GC content: 33.75

Gene sequence:

>477_bases
TTGGGAAGATTATTTAAAAAGTCTAAAGGAAGGGGAGAAATAATTATGATGCCATATAGTGATAAAGTTATGGAACATTT
TAGAAATCCAAGAAATGTAGGAGAAATTTCAGATGCAAATGGAGTTGGAGAAGTTGGAAATCCTAAATGCGGAGATATAA
TGAAAATATATTTAAAAGTTGAAGATAATATAATAAAAGATGTTAAATTCAAAACTTTTGGGTGTGGCTCTGCTATAGCT
TCTTCAAGTATGGCAACTGAGTTAATAAAAGGGAAGACTTTAGAAGAAGCTTGGGAATTATCTAATAAGGCAGTAGCTGA
TGCATTAGATGGATTACCACCAGTAAAAATGCACTGCTCAGTATTAGCAGAAGAAGCTATCCATAAGGCTATAAATGATT
ATAGGGAGTCTATAGGTTTAGAGCCTTGGGAAATGAAAGTTCACTCGGATCATATACATGATGAAGTGCACGGATGA

Upstream 100 bases:

>100_bases
TAAGGCTTACTCTAGGAGAAGGTAGTACAGAAGAAGATGTAGATTATATATTAAATACGCTTCCAGATATAGTAAAAAGA
AGACGTGAAATGTCACCTTA

Downstream 100 bases:

>100_bases
TTATATTAAAAATCCCAATGAAATATTTCATTGGGATTTTTAAAGAAATACTATAATAAGGTATGGTGAAAAAAATGAAG
AAAAAAGTAGTAGTAGGAAT

Product: nifU protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MGRLFKKSKGRGEIIMMPYSDKVMEHFRNPRNVGEISDANGVGEVGNPKCGDIMKIYLKVEDNIIKDVKFKTFGCGSAIA
SSSMATELIKGKTLEEAWELSNKAVADALDGLPPVKMHCSVLAEEAIHKAINDYRESIGLEPWEMKVHSDHIHDEVHG

Sequences:

>Translated_158_residues
MGRLFKKSKGRGEIIMMPYSDKVMEHFRNPRNVGEISDANGVGEVGNPKCGDIMKIYLKVEDNIIKDVKFKTFGCGSAIA
SSSMATELIKGKTLEEAWELSNKAVADALDGLPPVKMHCSVLAEEAIHKAINDYRESIGLEPWEMKVHSDHIHDEVHG
>Mature_157_residues
GRLFKKSKGRGEIIMMPYSDKVMEHFRNPRNVGEISDANGVGEVGNPKCGDIMKIYLKVEDNIIKDVKFKTFGCGSAIAS
SSMATELIKGKTLEEAWELSNKAVADALDGLPPVKMHCSVLAEEAIHKAINDYRESIGLEPWEMKVHSDHIHDEVHG

Specific function: Involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=121, Percent_Identity=55.3719008264463, Blast_Score=133, Evalue=8e-32,
Organism=Homo sapiens, GI24307953, Length=121, Percent_Identity=54.5454545454545, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1788878, Length=123, Percent_Identity=56.0975609756098, Blast_Score=140, Evalue=4e-35,
Organism=Caenorhabditis elegans, GI17543474, Length=123, Percent_Identity=54.4715447154472, Blast_Score=131, Evalue=2e-31,
Organism=Saccharomyces cerevisiae, GI6325122, Length=123, Percent_Identity=54.4715447154472, Blast_Score=134, Evalue=6e-33,
Organism=Saccharomyces cerevisiae, GI6324800, Length=122, Percent_Identity=56.5573770491803, Blast_Score=132, Evalue=2e-32,
Organism=Drosophila melanogaster, GI21355597, Length=138, Percent_Identity=51.4492753623188, Blast_Score=135, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007419
- InterPro:   IPR016217
- InterPro:   IPR010238
- InterPro:   IPR001075
- InterPro:   IPR002871
- ProDom:   PD002830 [H]

Pfam domain/function: PF04324 Fer2_BFD; PF01106 NifU; PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 17510; Mature: 17379

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRLFKKSKGRGEIIMMPYSDKVMEHFRNPRNVGEISDANGVGEVGNPKCGDIMKIYLKV
CCCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHH
EDNIIKDVKFKTFGCGSAIASSSMATELIKGKTLEEAWELSNKAVADALDGLPPVKMHCS
CCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH
VLAEEAIHKAINDYRESIGLEPWEMKVHSDHIHDEVHG
HHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHCCC
>Mature Secondary Structure 
GRLFKKSKGRGEIIMMPYSDKVMEHFRNPRNVGEISDANGVGEVGNPKCGDIMKIYLKV
CCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHH
EDNIIKDVKFKTFGCGSAIASSSMATELIKGKTLEEAWELSNKAVADALDGLPPVKMHCS
CCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH
VLAEEAIHKAINDYRESIGLEPWEMKVHSDHIHDEVHG
HHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2644218; 3040672; 7947754; 10819462 [H]