| Definition | Clostridium tetani E88 chromosome, complete genome. |
|---|---|
| Accession | NC_004557 |
| Length | 2,799,251 |
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The map label for this gene is 28210630
Identifier: 28210630
GI number: 28210630
Start: 975595
End: 976845
Strand: Direct
Name: 28210630
Synonym: CTC00919
Alternate gene names: NA
Gene position: 975595-976845 (Clockwise)
Preceding gene: 28210629
Following gene: 28210631
Centisome position: 34.85
GC content: 24.14
Gene sequence:
>1251_bases ATGAAATTTAAATATGCTATTAGAGGAATATCAAGCAGATTTTTTTATTCATTTTTAATTATTGCTCAATTAATTTTTGG ATTTTATTCTATGTATGAAAACATAAATTTATATAAAAAAATGAATTTGGAGACAAACAAGGTAGAAAAATTTTTTAAAG ATAAAAAAGCTTATGCCTTAGAGGTTGAAAGTATCAATTATAATAGTAATGATATAGAATTTCAAAAAATAATGGATGCT TTCAGGATAATGGAAGATAGTTCTAAGTATACTTTTATAAAAACTACAATGACAGGAGAGATGATTCCTACTTTTAATAA TTATAAACAATTTGCAGCAAGTGATTTTGAAGCTAATTCTAATGGTAAAACATGTTTTCAATTTAAGCATAATAGTATAA ATAAATCATATCTTAAAACCTATCCGTTAAAGGTTGAAAAAGGAAGATTATTTACCAGTAATGAATTTGATTTTATTGGT AAAGATAGTTTTGTATTTCCTATTGTAGTTGGAGCAAATTATGGTAAATATTTTAAAGTAGGAGATGAATTTCTACTAGA TTCAAGTAAAAAACGAATAGGCAAAATAATAGGAATACTTAAAGAAGATGAGTGTGGTCCCGGAGATATATGCCAGCCAG ATATTAGATATATAAATTTAAATAACTATATTATATCTACAGATGCAATTTATGAAAGCAAACTAATTTTATGTGATTTG ACATTATATAATGCAAATTACATTCTATTTGATAATTCTACAAATGAATCTGAAATATATAAGGAGCTTACAAAAATTAA AAAAATGTTTAATGATATACCTGTTATAAGGGAAGCTGGTATAAGGGATTTGACAAAATATGTAACTCAAGATTTGGACA TGCTTAAAGAACAATATGAAATAGTAGTTATAACATCTATTAGTGTCATTATATTTGTATGTATAACATTTATTATATCA ATATTGGATTCTATAAATAAAAGAAAAAAGGAATATGGTATACATATTATGAGTGGAGGAAAATTATCTGATATTGCTGG AATTACGTATTTAGAAATATTTATTACTTTTTTTATGGCATATATGATTACAGCATCAATTATATACTATAGAGATGGAA GATTAATAAATACTAATAGCTTACTTATGTTATTGATTTTAATGGTAGCTATATCTACAGTTTCAGCCTTAATTCCCATA ATAAGAATATTTAATTTAGATGTTAGTCAATTAGTTAAAGGGGATGAATAG
Upstream 100 bases:
>100_bases TTATTTTTATATTAATTATAGGAAGTATAGTTATCAGCATAAGTGCATTTAATATAAATAAAACTCAAATAAGTTATCTT ATCAAAGGGAAGGTATAATT
Downstream 100 bases:
>100_bases ATATGGAAATTATAAAATTAAATAATGTAAATAAGATATATTCTTCAAAACAAAATAAAGTAAATGCATTAAACAATATA AATTTAAATATTAACAAAGG
Product: membrane-spanning protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 416; Mature: 416
Protein sequence:
>416_residues MKFKYAIRGISSRFFYSFLIIAQLIFGFYSMYENINLYKKMNLETNKVEKFFKDKKAYALEVESINYNSNDIEFQKIMDA FRIMEDSSKYTFIKTTMTGEMIPTFNNYKQFAASDFEANSNGKTCFQFKHNSINKSYLKTYPLKVEKGRLFTSNEFDFIG KDSFVFPIVVGANYGKYFKVGDEFLLDSSKKRIGKIIGILKEDECGPGDICQPDIRYINLNNYIISTDAIYESKLILCDL TLYNANYILFDNSTNESEIYKELTKIKKMFNDIPVIREAGIRDLTKYVTQDLDMLKEQYEIVVITSISVIIFVCITFIIS ILDSINKRKKEYGIHIMSGGKLSDIAGITYLEIFITFFMAYMITASIIYYRDGRLINTNSLLMLLILMVAISTVSALIPI IRIFNLDVSQLVKGDE
Sequences:
>Translated_416_residues MKFKYAIRGISSRFFYSFLIIAQLIFGFYSMYENINLYKKMNLETNKVEKFFKDKKAYALEVESINYNSNDIEFQKIMDA FRIMEDSSKYTFIKTTMTGEMIPTFNNYKQFAASDFEANSNGKTCFQFKHNSINKSYLKTYPLKVEKGRLFTSNEFDFIG KDSFVFPIVVGANYGKYFKVGDEFLLDSSKKRIGKIIGILKEDECGPGDICQPDIRYINLNNYIISTDAIYESKLILCDL TLYNANYILFDNSTNESEIYKELTKIKKMFNDIPVIREAGIRDLTKYVTQDLDMLKEQYEIVVITSISVIIFVCITFIIS ILDSINKRKKEYGIHIMSGGKLSDIAGITYLEIFITFFMAYMITASIIYYRDGRLINTNSLLMLLILMVAISTVSALIPI IRIFNLDVSQLVKGDE >Mature_416_residues MKFKYAIRGISSRFFYSFLIIAQLIFGFYSMYENINLYKKMNLETNKVEKFFKDKKAYALEVESINYNSNDIEFQKIMDA FRIMEDSSKYTFIKTTMTGEMIPTFNNYKQFAASDFEANSNGKTCFQFKHNSINKSYLKTYPLKVEKGRLFTSNEFDFIG KDSFVFPIVVGANYGKYFKVGDEFLLDSSKKRIGKIIGILKEDECGPGDICQPDIRYINLNNYIISTDAIYESKLILCDL TLYNANYILFDNSTNESEIYKELTKIKKMFNDIPVIREAGIRDLTKYVTQDLDMLKEQYEIVVITSISVIIFVCITFIIS ILDSINKRKKEYGIHIMSGGKLSDIAGITYLEIFITFFMAYMITASIIYYRDGRLINTNSLLMLLILMVAISTVSALIPI IRIFNLDVSQLVKGDE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48098; Mature: 48098
Theoretical pI: Translated: 8.12; Mature: 8.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFKYAIRGISSRFFYSFLIIAQLIFGFYSMYENINLYKKMNLETNKVEKFFKDKKAYAL CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCEEE EVESINYNSNDIEFQKIMDAFRIMEDSSKYTFIKTTMTGEMIPTFNNYKQFAASDFEANS EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHCCCCCCCC NGKTCFQFKHNSINKSYLKTYPLKVEKGRLFTSNEFDFIGKDSFVFPIVVGANYGKYFKV CCCEEEEEECCCCCHHHHHCCCEEEECCEEEECCCCCCCCCCCEEEEEEEECCCCCEEEC GDEFLLDSSKKRIGKIIGILKEDECGPGDICQPDIRYINLNNYIISTDAIYESKLILCDL CHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCEEEECCCEECCEEEEEEE TLYNANYILFDNSTNESEIYKELTKIKKMFNDIPVIREAGIRDLTKYVTQDLDMLKEQYE EEECCEEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHCCC IVVITSISVIIFVCITFIISILDSINKRKKEYGIHIMSGGKLSDIAGITYLEIFITFFMA EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHHHHH YMITASIIYYRDGRLINTNSLLMLLILMVAISTVSALIPIIRIFNLDVSQLVKGDE HHHHHHEEEEECCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC >Mature Secondary Structure MKFKYAIRGISSRFFYSFLIIAQLIFGFYSMYENINLYKKMNLETNKVEKFFKDKKAYAL CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCEEE EVESINYNSNDIEFQKIMDAFRIMEDSSKYTFIKTTMTGEMIPTFNNYKQFAASDFEANS EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHCCCCCCCC NGKTCFQFKHNSINKSYLKTYPLKVEKGRLFTSNEFDFIGKDSFVFPIVVGANYGKYFKV CCCEEEEEECCCCCHHHHHCCCEEEECCEEEECCCCCCCCCCCEEEEEEEECCCCCEEEC GDEFLLDSSKKRIGKIIGILKEDECGPGDICQPDIRYINLNNYIISTDAIYESKLILCDL CHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCEEEECCCEECCEEEEEEE TLYNANYILFDNSTNESEIYKELTKIKKMFNDIPVIREAGIRDLTKYVTQDLDMLKEQYE EEECCEEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHCCC IVVITSISVIIFVCITFIISILDSINKRKKEYGIHIMSGGKLSDIAGITYLEIFITFFMA EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHHHHH YMITASIIYYRDGRLINTNSLLMLLILMVAISTVSALIPIIRIFNLDVSQLVKGDE HHHHHHEEEEECCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA