Click here to switch to the map view.

The map label for this gene is yqhC [C]

Identifier: 28210624

GI number: 28210624

Start: 966686

End: 967690

Strand: Direct

Name: yqhC [C]

Synonym: CTC00913

Alternate gene names: 28210624

Gene position: 966686-967690 (Clockwise)

Preceding gene: 28210623

Following gene: 28210625

Centisome position: 34.53

GC content: 23.28

Gene sequence:

>1005_bases
TTGGTAAGTGGGGGGAGGTTTTTGGATATTAAAAAGGATACTGTAAATAGTTACTGTAAATACATTGAAAAAGAATTTGA
CTGTAAAACTTCTGAAGAAATACTAGGGAAAAAATATATTATTGCTAAACAATTTGGAATTGGTAATCTTTCAAGAATGA
AAATAGAAGATGGAATAGAAATTTCAATATTTCATATGTATAAAGCAGATACACATTTTGATAATAGGATGTATAAGGAT
GATATTTTAGAAATAAGCTATTGTTATAGCGGCATTGGAGAAATTAGAACTTTGCCACAGAACAAAAAGTATATATTTAA
AAAAGGGCAAATTTGTATTTATAAATCATTAAACGATGTGGATTATTTTAAATTTAAATATGATAATTGTAAAACTATGT
CTATTCATATGGATTTTAGTATTATTAAAAATGTGATAAATCCAATATGGGAAGACAAAATGATAACAGATTGGGAAAAT
CATATAAATGAAATATTTAAAGATGATACATTAATAATTGAAAGGGCTACTGATAAAATAAGAAAAATAGCAGAGCAAAT
AGAGAATATTCCAATAAAGAATATGTTAGATTATATAAATTTAAAACTTAAGACTATAGAACTTTTATCTACTTTTTTTA
AAGACAAATTTAATAAAAAAAATTTAAACAAACAAGAAACAGAGATTATAGTTAATGCTAAAGAAATAATAAACAAAAAT
CTCCAAAGAGTACCATCAGTTAAAGAGTTAGCTTGTAATTTAAATATAAGCATATATAAATTGCAAGAAGAATTTAAAAA
TGTAATAGGGTGTACGGTTTATGAATATATAAAAAAAGTTAGAATGGAAAAGGCTAAATACTTACTAAAGAGTACAAATA
TGTCAGTTTTAGAAATTGCAAATGAAATAGGATATGAAAATCCAAGTAAATTTGCTAATGCATTTAAAGAATATAATAAT
GTAACTCCACTAAAATATAGAAAATTAAATATAACCAAATATTGA

Upstream 100 bases:

>100_bases
TGATGATGTGTAGAAAGGCAGCAGATTTTTTAGATTCTAAATTTGATTTAGTTATAAATGGTACTAAGTTACTATAAGTA
TTAAATTTTACTAAAATTAA

Downstream 100 bases:

>100_bases
AATAAGGAAATGCTTCAAATTTAACAAAATTACTTAGTTTTGTTTTTTGGAGCATTTTTTATTTCTTTTGGAGTAGATAA
TGATAATCAATATCAATTAT

Product: transcriptional regulatory protein

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; AraC Family Transcriptional Regulator; Two Component AraC Family Transcriptional Regulator; Two Component Transcriptional Regulator AraC Family; Transcriptional Regulator AraC Family Protein; Helix-Turn-Helix Domain-Containing Protein; Response Regulator Receiver Protein; AraC Type Helix-Turn-Helix- Domain-Containing Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; Two Component Transcriptional Regulator Arac Family; Regulatory Protein PcrR; Two Component Transcriptional Regulator; Response Regulator; AraC Family Regulatory Protein; AraC/XylS Family Transcriptional Regulator; Transcriptional Regulatory Protein; Regulatory Helix-Turn-Helix Protein AraC Family; AraC Family Transcription Regulator; Regulatory Protein PchR; Regulatory Protein; Adenosine Deaminase; Two-Component Regulatory System Response Regulator Protein

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MVSGGRFLDIKKDTVNSYCKYIEKEFDCKTSEEILGKKYIIAKQFGIGNLSRMKIEDGIEISIFHMYKADTHFDNRMYKD
DILEISYCYSGIGEIRTLPQNKKYIFKKGQICIYKSLNDVDYFKFKYDNCKTMSIHMDFSIIKNVINPIWEDKMITDWEN
HINEIFKDDTLIIERATDKIRKIAEQIENIPIKNMLDYINLKLKTIELLSTFFKDKFNKKNLNKQETEIIVNAKEIINKN
LQRVPSVKELACNLNISIYKLQEEFKNVIGCTVYEYIKKVRMEKAKYLLKSTNMSVLEIANEIGYENPSKFANAFKEYNN
VTPLKYRKLNITKY

Sequences:

>Translated_334_residues
MVSGGRFLDIKKDTVNSYCKYIEKEFDCKTSEEILGKKYIIAKQFGIGNLSRMKIEDGIEISIFHMYKADTHFDNRMYKD
DILEISYCYSGIGEIRTLPQNKKYIFKKGQICIYKSLNDVDYFKFKYDNCKTMSIHMDFSIIKNVINPIWEDKMITDWEN
HINEIFKDDTLIIERATDKIRKIAEQIENIPIKNMLDYINLKLKTIELLSTFFKDKFNKKNLNKQETEIIVNAKEIINKN
LQRVPSVKELACNLNISIYKLQEEFKNVIGCTVYEYIKKVRMEKAKYLLKSTNMSVLEIANEIGYENPSKFANAFKEYNN
VTPLKYRKLNITKY
>Mature_334_residues
MVSGGRFLDIKKDTVNSYCKYIEKEFDCKTSEEILGKKYIIAKQFGIGNLSRMKIEDGIEISIFHMYKADTHFDNRMYKD
DILEISYCYSGIGEIRTLPQNKKYIFKKGQICIYKSLNDVDYFKFKYDNCKTMSIHMDFSIIKNVINPIWEDKMITDWEN
HINEIFKDDTLIIERATDKIRKIAEQIENIPIKNMLDYINLKLKTIELLSTFFKDKFNKKNLNKQETEIIVNAKEIINKN
LQRVPSVKELACNLNISIYKLQEEFKNVIGCTVYEYIKKVRMEKAKYLLKSTNMSVLEIANEIGYENPSKFANAFKEYNN
VTPLKYRKLNITKY

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39502; Mature: 39502

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSGGRFLDIKKDTVNSYCKYIEKEFDCKTSEEILGKKYIIAKQFGIGNLSRMKIEDGIE
CCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEEECCCCCCEEEEECCCCE
ISIFHMYKADTHFDNRMYKDDILEISYCYSGIGEIRTLPQNKKYIFKKGQICIYKSLNDV
EEEEEEEECCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCEEEECCCEEEEECCCCC
DYFKFKYDNCKTMSIHMDFSIIKNVINPIWEDKMITDWENHINEIFKDDTLIIERATDKI
EEEEEEECCEEEEEEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEHHHHHH
RKIAEQIENIPIKNMLDYINLKLKTIELLSTFFKDKFNKKNLNKQETEIIVNAKEIINKN
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHEEEEHHHHHHHH
LQRVPSVKELACNLNISIYKLQEEFKNVIGCTVYEYIKKVRMEKAKYLLKSTNMSVLEIA
HHHCCCHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
NEIGYENPSKFANAFKEYNNVTPLKYRKLNITKY
HHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCC
>Mature Secondary Structure
MVSGGRFLDIKKDTVNSYCKYIEKEFDCKTSEEILGKKYIIAKQFGIGNLSRMKIEDGIE
CCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEEECCCCCCEEEEECCCCE
ISIFHMYKADTHFDNRMYKDDILEISYCYSGIGEIRTLPQNKKYIFKKGQICIYKSLNDV
EEEEEEEECCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCEEEECCCEEEEECCCCC
DYFKFKYDNCKTMSIHMDFSIIKNVINPIWEDKMITDWENHINEIFKDDTLIIERATDKI
EEEEEEECCEEEEEEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEHHHHHH
RKIAEQIENIPIKNMLDYINLKLKTIELLSTFFKDKFNKKNLNKQETEIIVNAKEIINKN
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHEEEEHHHHHHHH
LQRVPSVKELACNLNISIYKLQEEFKNVIGCTVYEYIKKVRMEKAKYLLKSTNMSVLEIA
HHHCCCHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
NEIGYENPSKFANAFKEYNNVTPLKYRKLNITKY
HHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA