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The map label for this gene is gntR [H]

Identifier: 28210537

GI number: 28210537

Start: 868861

End: 869565

Strand: Direct

Name: gntR [H]

Synonym: CTC00820

Alternate gene names: 28210537

Gene position: 868861-869565 (Clockwise)

Preceding gene: 28210536

Following gene: 28210538

Centisome position: 31.04

GC content: 28.94

Gene sequence:

>705_bases
TTGCTTAATAAAAAAGACAGGAGTAGTAATGTGTTAATTAACAAAAAAACTTTAAGTGATCAAATTTATGATATATTAAA
AATGGAAATATTAAAAAGGGAAATTCCATTTGGCTCAAAGCTTGTAAATAGGACATTACAAAAAAAATTTGGAGTTAGCT
CATCTCCTATTCGAGATGCTATAAACCGTCTAAATCAGGATGGACTTATTACATCTATCGACAAATCTGGAGCAACAGTG
GTTGATTTTGATTACGATTTTTTTCTTGAGGTCAATGAGGTGATTTTATATGTAGTTAACACCGGTGTAAAATTGTCTTT
TGAGAAATCCGACACCGAAGAAGTATGTAAGTATTTAGAAAAGTATTTATTACTTCAAGAGAAGTATATAGGTACTGATG
AATTCTATGATTATGATTATAAGTTTCATAAAACATTTATTAAATACTCTAAAAATACTAGATTAGAAAAGATTTTTAAA
GAATACAATGTTCTTCATGAAATGCTTGTTAGGAGTTATTATGAGCCTGAGACCTTTCAAATTCAGGAAGATAGTATTAA
GATGCATAAGCAAATATTAGATGCGTTCAGAAATAAGAACTATGGATTGGCAATGACATTTACCGAAGAACATTATAAAG
GTGCTGAAAAGATTTTTAAGAAAATGTTTGAAGAGAAGAAAGAAAAACTGAAAGAGGGCAATTGA

Upstream 100 bases:

>100_bases
GTTTAATAAATATTTTAAGGAGGTTGTGGTGAATTATCGCTCAACCTCTTTTGTTTACATAATAAAAAATTAATGGTATA
ATATATCAAATTAATTTATT

Downstream 100 bases:

>100_bases
GGTGATGCATTTATGAAAAAAATAAGAAATAGTATAAAAAAGATAAGTTTTATATTTATAATAGTAGCTATGATTTTTTC
AATGGTTGCTTGTTCAGAAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MLNKKDRSSNVLINKKTLSDQIYDILKMEILKREIPFGSKLVNRTLQKKFGVSSSPIRDAINRLNQDGLITSIDKSGATV
VDFDYDFFLEVNEVILYVVNTGVKLSFEKSDTEEVCKYLEKYLLLQEKYIGTDEFYDYDYKFHKTFIKYSKNTRLEKIFK
EYNVLHEMLVRSYYEPETFQIQEDSIKMHKQILDAFRNKNYGLAMTFTEEHYKGAEKIFKKMFEEKKEKLKEGN

Sequences:

>Translated_234_residues
MLNKKDRSSNVLINKKTLSDQIYDILKMEILKREIPFGSKLVNRTLQKKFGVSSSPIRDAINRLNQDGLITSIDKSGATV
VDFDYDFFLEVNEVILYVVNTGVKLSFEKSDTEEVCKYLEKYLLLQEKYIGTDEFYDYDYKFHKTFIKYSKNTRLEKIFK
EYNVLHEMLVRSYYEPETFQIQEDSIKMHKQILDAFRNKNYGLAMTFTEEHYKGAEKIFKKMFEEKKEKLKEGN
>Mature_234_residues
MLNKKDRSSNVLINKKTLSDQIYDILKMEILKREIPFGSKLVNRTLQKKFGVSSSPIRDAINRLNQDGLITSIDKSGATV
VDFDYDFFLEVNEVILYVVNTGVKLSFEKSDTEEVCKYLEKYLLLQEKYIGTDEFYDYDYKFHKTFIKYSKNTRLEKIFK
EYNVLHEMLVRSYYEPETFQIQEDSIKMHKQILDAFRNKNYGLAMTFTEEHYKGAEKIFKKMFEEKKEKLKEGN

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27834; Mature: 27834

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNKKDRSSNVLINKKTLSDQIYDILKMEILKREIPFGSKLVNRTLQKKFGVSSSPIRDA
CCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHH
INRLNQDGLITSIDKSGATVVDFDYDFFLEVNEVILYVVNTGVKLSFEKSDTEEVCKYLE
HHHCCCCCCEEEECCCCCEEEEECCHHHEEHHHHHEEEECCCEEEEECCCCHHHHHHHHH
KYLLLQEKYIGTDEFYDYDYKFHKTFIKYSKNTRLEKIFKEYNVLHEMLVRSYYEPETFQ
HHHHHHHHHCCCCHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEE
IQEDSIKMHKQILDAFRNKNYGLAMTFTEEHYKGAEKIFKKMFEEKKEKLKEGN
ECHHHHHHHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLNKKDRSSNVLINKKTLSDQIYDILKMEILKREIPFGSKLVNRTLQKKFGVSSSPIRDA
CCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHH
INRLNQDGLITSIDKSGATVVDFDYDFFLEVNEVILYVVNTGVKLSFEKSDTEEVCKYLE
HHHCCCCCCEEEECCCCCEEEEECCHHHEEHHHHHEEEECCCEEEEECCCCHHHHHHHHH
KYLLLQEKYIGTDEFYDYDYKFHKTFIKYSKNTRLEKIFKEYNVLHEMLVRSYYEPETFQ
HHHHHHHHHCCCCHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEE
IQEDSIKMHKQILDAFRNKNYGLAMTFTEEHYKGAEKIFKKMFEEKKEKLKEGN
ECHHHHHHHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]