| Definition | Clostridium tetani E88 chromosome, complete genome. |
|---|---|
| Accession | NC_004557 |
| Length | 2,799,251 |
Click here to switch to the map view.
The map label for this gene is 28210479
Identifier: 28210479
GI number: 28210479
Start: 794986
End: 797013
Strand: Direct
Name: 28210479
Synonym: CTC00759
Alternate gene names: NA
Gene position: 794986-797013 (Clockwise)
Preceding gene: 28210478
Following gene: 28210480
Centisome position: 28.4
GC content: 22.78
Gene sequence:
>2028_bases ATGAAACTAAAATATAAAAAAATATGTATTTTTGTATTGTCATGTATAGTAAGTGTTTTAGCAAATTTCAATAATGTTTA TGCTAAAGATTTAATTATTAATGCAAATAGCAACTTAGATAGTAAAGCTAAGCTAGGTAACGTAGTACCTATAGATATAA ATATTGAATCAAAAGAAAATATAGAAGGAAAGTTATGTTTGTATATTTCAAAAGAGAAGTATGAACACCATATAAAAATT TCTTCAGGAGTATCAAATAAATATACCTTTTTAGTACCAGTAAAAAATGGAGTAAAAGAAATGAAGATATCAGTAGAAGA AAATAATAAGGTAGTTAAAGAAAAAAAAATTCCACTGACAGTACATGAATCCAATTCATTATTTATAGGAATTTTTAGTG ATAGTGAAAATAACTATAACTATATGAAAAATTTGAAGGTAAATTCATTAGATATAAATAGTAGTGAAACTATTAGTTTA AAAGATAAAGAATTAAGTTTTGAACTTTTAAAAAATTTGAATTTTATAATTTTAGACGATTTTAATTTTGAAAGTTTATC AAATGATAGTAAAGATGCCTTGGATAAATGGCTAAAGCATGGTGGAATTATATTTATAGGAAAAGGAAAAAATGCTTACA AGAATTTGAAAGGACCATTTGAAAATATAAAAAAAATAACATATGTAGATAAAGGGTCAATTATTCCTATAAATTTTGAG TTAAGTGATAAAAACAATATGTCTAAAATTGATGAGATTATTACACAAAACATTAATAATGAAAATTTATACTCTTTAAC AGCCAATATAGATTTAAAAAAAGAGGCTACTAAAGCCGAACAACTTAAAGGTTCTGCCAATAATATGCTTAAAGTAAATA AGAATATAATTTATTTTCTAATGGCTGTTTTAATTGTTTATTTAGTATGTTTGACAACTATAGTTTTATTAAAAAAGAGT AGCATGTACATATGGATAGGAATAATTATAATTTTTTCAATAGTAAGTTCTGTAGTATATTTCATTGAAGGAGCTGGAAA TCAAAAAATAACAATGGCTTCGCTGAATGAATATTTTAATAAAAATTGTATTAGTAAATCATTAACTAATGTATATCCAA GTAAAAAAGATGTGTCATTATCATCAGATAGTTGGCAATTTATGTCACAACAAGGAACAGGAAAATATACCTTGGATCCA ATAGATAAAAAAATTATATATAAAAATCCTAAGGAAACCAATTATTTATACAATGTATCGTTACATAATTTAGAAAAACC TATAAATAATAAATTAAAATTAGAAAATAATCATTTAAAAGGAGAAATAAAAAATCCGTTTCCTTATGAATTAAAAGATT GTATTTTAATAGCTGGTGATAATTTAGTGAAAATAGGCAATATGAAGTCTGGAGAAGCTTTAGAGTTAAATTATGAATTA GATAATAATTTAAAAGGAAGAGGTGATTACGAATACTTAAGTTCAATAGAAAAAGAAATATCAGATAAAGATAAACAAGA ATTTCTAAAATACTATTTTAATTTACCTAATACAGAAAAGTTTAATTGTAGATTAATAGGCTTTAGTAATAGAAAGGTAT ATGAGAAAATTAATAACAAAGAAAGAAAAATAAACTCTATAAATATGGAGATAGCACCAATAGAGATTGAATTATTATCA AAAGAAATTAATATACCTTATGGATTTATAAAACCTATAATAAAAAAAGAAATAAAGGATAGTGAGAATGATATAAGAGA ATACACTTTTAAGCAGAAGGAAAGTATAAATTTATACTATGTACTTCCTAAAAATGTGAAATTAAATGAAATCCAATTAA GTGATTCTTTTAAAGATGGAAATTTTTATGTGGAGAGGTTTAACTATGAAACTAATAAATATGAGAAGTTAGATAAATTA CTTTTAAATAATATAAAAGACTTACATGGAAAGGTTTTAAATTTAAGAGTAAAAGGAAAAGGAAGATTAATAATTCCTAG TATATATGTAAAAGGAGCTTTAAACTAA
Upstream 100 bases:
>100_bases AAAAAATCAGAGAGTATAAAAAGTTATTTTGGAGCAGTAGTAGCAGAGGAAAATATTATATCAGTGCCATTTATTCAATA GTTATTTAGGATGTGAAAAT
Downstream 100 bases:
>100_bases GGTGGGATATTTATGAAAAAAAATTTAAAAAATATATACATAGATGATGGATTTATAATGTTAACTTATATTTTTATGAA TATATTAGCTTTATTAGCTT
Product: membrane-associated protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 675; Mature: 675
Protein sequence:
>675_residues MKLKYKKICIFVLSCIVSVLANFNNVYAKDLIINANSNLDSKAKLGNVVPIDINIESKENIEGKLCLYISKEKYEHHIKI SSGVSNKYTFLVPVKNGVKEMKISVEENNKVVKEKKIPLTVHESNSLFIGIFSDSENNYNYMKNLKVNSLDINSSETISL KDKELSFELLKNLNFIILDDFNFESLSNDSKDALDKWLKHGGIIFIGKGKNAYKNLKGPFENIKKITYVDKGSIIPINFE LSDKNNMSKIDEIITQNINNENLYSLTANIDLKKEATKAEQLKGSANNMLKVNKNIIYFLMAVLIVYLVCLTTIVLLKKS SMYIWIGIIIIFSIVSSVVYFIEGAGNQKITMASLNEYFNKNCISKSLTNVYPSKKDVSLSSDSWQFMSQQGTGKYTLDP IDKKIIYKNPKETNYLYNVSLHNLEKPINNKLKLENNHLKGEIKNPFPYELKDCILIAGDNLVKIGNMKSGEALELNYEL DNNLKGRGDYEYLSSIEKEISDKDKQEFLKYYFNLPNTEKFNCRLIGFSNRKVYEKINNKERKINSINMEIAPIEIELLS KEINIPYGFIKPIIKKEIKDSENDIREYTFKQKESINLYYVLPKNVKLNEIQLSDSFKDGNFYVERFNYETNKYEKLDKL LLNNIKDLHGKVLNLRVKGKGRLIIPSIYVKGALN
Sequences:
>Translated_675_residues MKLKYKKICIFVLSCIVSVLANFNNVYAKDLIINANSNLDSKAKLGNVVPIDINIESKENIEGKLCLYISKEKYEHHIKI SSGVSNKYTFLVPVKNGVKEMKISVEENNKVVKEKKIPLTVHESNSLFIGIFSDSENNYNYMKNLKVNSLDINSSETISL KDKELSFELLKNLNFIILDDFNFESLSNDSKDALDKWLKHGGIIFIGKGKNAYKNLKGPFENIKKITYVDKGSIIPINFE LSDKNNMSKIDEIITQNINNENLYSLTANIDLKKEATKAEQLKGSANNMLKVNKNIIYFLMAVLIVYLVCLTTIVLLKKS SMYIWIGIIIIFSIVSSVVYFIEGAGNQKITMASLNEYFNKNCISKSLTNVYPSKKDVSLSSDSWQFMSQQGTGKYTLDP IDKKIIYKNPKETNYLYNVSLHNLEKPINNKLKLENNHLKGEIKNPFPYELKDCILIAGDNLVKIGNMKSGEALELNYEL DNNLKGRGDYEYLSSIEKEISDKDKQEFLKYYFNLPNTEKFNCRLIGFSNRKVYEKINNKERKINSINMEIAPIEIELLS KEINIPYGFIKPIIKKEIKDSENDIREYTFKQKESINLYYVLPKNVKLNEIQLSDSFKDGNFYVERFNYETNKYEKLDKL LLNNIKDLHGKVLNLRVKGKGRLIIPSIYVKGALN >Mature_675_residues MKLKYKKICIFVLSCIVSVLANFNNVYAKDLIINANSNLDSKAKLGNVVPIDINIESKENIEGKLCLYISKEKYEHHIKI SSGVSNKYTFLVPVKNGVKEMKISVEENNKVVKEKKIPLTVHESNSLFIGIFSDSENNYNYMKNLKVNSLDINSSETISL KDKELSFELLKNLNFIILDDFNFESLSNDSKDALDKWLKHGGIIFIGKGKNAYKNLKGPFENIKKITYVDKGSIIPINFE LSDKNNMSKIDEIITQNINNENLYSLTANIDLKKEATKAEQLKGSANNMLKVNKNIIYFLMAVLIVYLVCLTTIVLLKKS SMYIWIGIIIIFSIVSSVVYFIEGAGNQKITMASLNEYFNKNCISKSLTNVYPSKKDVSLSSDSWQFMSQQGTGKYTLDP IDKKIIYKNPKETNYLYNVSLHNLEKPINNKLKLENNHLKGEIKNPFPYELKDCILIAGDNLVKIGNMKSGEALELNYEL DNNLKGRGDYEYLSSIEKEISDKDKQEFLKYYFNLPNTEKFNCRLIGFSNRKVYEKINNKERKINSINMEIAPIEIELLS KEINIPYGFIKPIIKKEIKDSENDIREYTFKQKESINLYYVLPKNVKLNEIQLSDSFKDGNFYVERFNYETNKYEKLDKL LLNNIKDLHGKVLNLRVKGKGRLIIPSIYVKGALN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 77587; Mature: 77587
Theoretical pI: Translated: 9.47; Mature: 9.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLKYKKICIFVLSCIVSVLANFNNVYAKDLIINANSNLDSKAKLGNVVPIDINIESKEN CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCHHHCCCEEEEEEEECCCCC IEGKLCLYISKEKYEHHIKISSGVSNKYTFLVPVKNGVKEMKISVEENNKVVKEKKIPLT CCCEEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEECCCEEE VHESNSLFIGIFSDSENNYNYMKNLKVNSLDINSSETISLKDKELSFELLKNLNFIILDD EECCCCEEEEEEECCCCCCCEEHEEEEEEEECCCCCEEEEECCHHHHHHHHCCCEEEEEC FNFESLSNDSKDALDKWLKHGGIIFIGKGKNAYKNLKGPFENIKKITYVDKGSIIPINFE CCCHHCCCCCHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHCCEEEEECCCCEEEEEEE LSDKNNMSKIDEIITQNINNENLYSLTANIDLKKEATKAEQLKGSANNMLKVNKNIIYFL ECCCCCHHHHHHHHHCCCCCCCEEEEEEEEEECHHHHHHHHHCCCCCCEEEECCHHHHHH MAVLIVYLVCLTTIVLLKKSSMYIWIGIIIIFSIVSSVVYFIEGAGNQKITMASLNEYFN HHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHH KNCISKSLTNVYPSKKDVSLSSDSWQFMSQQGTGKYTLDPIDKKIIYKNPKETNYLYNVS HHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCEEEECCCCCCCEEEEEE LHNLEKPINNKLKLENNHLKGEIKNPFPYELKDCILIAGDNLVKIGNMKSGEALELNYEL HHHCCCCCCCCEEEECCCCCCEECCCCCCCCCCEEEEECCCEEEECCCCCCCEEEEEEEE DNNLKGRGDYEYLSSIEKEISDKDKQEFLKYYFNLPNTEKFNCRLIGFSNRKVYEKINNK CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHCCH ERKINSINMEIAPIEIELLSKEINIPYGFIKPIIKKEIKDSENDIREYTFKQKESINLYY HHEEEEECEEEEEEEEEEEHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEE VLPKNVKLNEIQLSDSFKDGNFYVERFNYETNKYEKLDKLLLNNIKDLHGKVLNLRVKGK EECCCCEEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCC GRLIIPSIYVKGALN CCEEEEEEEEEECCC >Mature Secondary Structure MKLKYKKICIFVLSCIVSVLANFNNVYAKDLIINANSNLDSKAKLGNVVPIDINIESKEN CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCHHHCCCEEEEEEEECCCCC IEGKLCLYISKEKYEHHIKISSGVSNKYTFLVPVKNGVKEMKISVEENNKVVKEKKIPLT CCCEEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEECCCEEE VHESNSLFIGIFSDSENNYNYMKNLKVNSLDINSSETISLKDKELSFELLKNLNFIILDD EECCCCEEEEEEECCCCCCCEEHEEEEEEEECCCCCEEEEECCHHHHHHHHCCCEEEEEC FNFESLSNDSKDALDKWLKHGGIIFIGKGKNAYKNLKGPFENIKKITYVDKGSIIPINFE CCCHHCCCCCHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHCCEEEEECCCCEEEEEEE LSDKNNMSKIDEIITQNINNENLYSLTANIDLKKEATKAEQLKGSANNMLKVNKNIIYFL ECCCCCHHHHHHHHHCCCCCCCEEEEEEEEEECHHHHHHHHHCCCCCCEEEECCHHHHHH MAVLIVYLVCLTTIVLLKKSSMYIWIGIIIIFSIVSSVVYFIEGAGNQKITMASLNEYFN HHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHH KNCISKSLTNVYPSKKDVSLSSDSWQFMSQQGTGKYTLDPIDKKIIYKNPKETNYLYNVS HHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCEEEECCCCCCCEEEEEE LHNLEKPINNKLKLENNHLKGEIKNPFPYELKDCILIAGDNLVKIGNMKSGEALELNYEL HHHCCCCCCCCEEEECCCCCCEECCCCCCCCCCEEEEECCCEEEECCCCCCCEEEEEEEE DNNLKGRGDYEYLSSIEKEISDKDKQEFLKYYFNLPNTEKFNCRLIGFSNRKVYEKINNK CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHCCH ERKINSINMEIAPIEIELLSKEINIPYGFIKPIIKKEIKDSENDIREYTFKQKESINLYY HHEEEEECEEEEEEEEEEEHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEE VLPKNVKLNEIQLSDSFKDGNFYVERFNYETNKYEKLDKLLLNNIKDLHGKVLNLRVKGK EECCCCEEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCC GRLIIPSIYVKGALN CCEEEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA